Miyakogusa Predicted Gene

Lj5g3v0780830.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0780830.1 tr|B9H7B0|B9H7B0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_760878 PE=4
SV=1,40.82,2e-18,seg,NULL,CUFF.53979.1
         (334 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02890.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   142   3e-34
AT5G16680.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   138   6e-33
AT1G43770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    84   1e-16
AT5G61090.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    56   4e-08

>AT3G02890.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr3:640828-645303 FORWARD LENGTH=994
          Length = 994

 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 106/185 (57%), Gaps = 5/185 (2%)

Query: 94  LRDLAQVEAATLLQGLVVPNTDHSWLGKFLIHNSEGIPWNCDGVLAHLSNCASLEVREVF 153
           +RDL       L     +P  ++ W G   +  S  +     G+ A+LS  AS +V EV 
Sbjct: 677 MRDLPVAAPNVLSTTSAIPKPEYIWQGDLEVQKSRNLSAMHSGIQAYLSTLASPKVVEVV 736

Query: 154 DRLPGIIILEELPRVRIWPPQFMGSQVTGENIALYFFAKHFDSYD--YRGLMNYMINNDL 211
            + P  + L E+PR+  WP QF  +    +++AL+FFAK  +SY+  Y+ L++ MI  DL
Sbjct: 737 KQFPEKVTLNEVPRLSSWPAQFQDTGAKEQHVALFFFAKDIESYEKNYKPLVDNMIQKDL 796

Query: 212 ALKGNLDGVELLIFPSNILPERSQLWNQMMFLWGVFKVQKVNNS---ANTPVSNSLKQGN 268
           ALKGNL+GVELLIF SN LP+  Q WN + FLWGVF+ +K + S    NTP+  S    N
Sbjct: 797 ALKGNLEGVELLIFASNQLPQDCQRWNMLFFLWGVFRGKKESCSNPPKNTPLPASCVSPN 856

Query: 269 GDTVK 273
            DT +
Sbjct: 857 RDTFR 861


>AT5G16680.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr5:5467534-5472956 REVERSE LENGTH=1311
          Length = 1311

 Score =  138 bits (347), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 100/178 (56%), Gaps = 5/178 (2%)

Query: 92  PPLRDLAQVEAATLLQGLVVPNTDHSWLGKFLIHNSEGIPWNCDGVLAHLSNCASLEVRE 151
           P +RDL  V +  +L+   +P+ +  W G   +           G+ AHLS  AS  V E
Sbjct: 812 PVMRDLPLVPSPVMLRSSAIPDHEFIWQGDLEVRKIINQSAMHSGIQAHLSTLASPRVAE 871

Query: 152 VFDRLPGIIILEELPRVRIWPPQFMGSQVTGENIALYFFAKHFDSYD--YRGLMNYMINN 209
           V ++ P    L E+PR   WP QF        +IAL+FFAK  +SY+  Y+ L++ MI N
Sbjct: 872 VVNKFPETFSLNEVPRKSTWPTQFEKLGTKEAHIALFFFAKDTESYERNYKPLVDNMIKN 931

Query: 210 DLALKGNLDGVELLIFPSNILPERSQLWNQMMFLWGVFKVQKVNN-SANT--PVSNSL 264
           DLALKGNLD V+LLIF SN LP   Q WN + FLWGVF+ +K  N   NT  P SN L
Sbjct: 932 DLALKGNLDNVDLLIFASNQLPSNCQRWNMLYFLWGVFQGRKETNPQKNTSLPTSNVL 989


>AT1G43770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:16548509-16550257 FORWARD LENGTH=431
          Length = 431

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 3/117 (2%)

Query: 135 DGVLAHLSNCASLEVREVFDRLPGIIILEELPRVRIWPPQFMGSQ-VTGENIALYFF--A 191
           DG++AH+S+ A  +V E    L G +  E LPR+ +WP  F+ +     E++AL+FF  +
Sbjct: 308 DGIVAHVSSLACPKVHETASSLKGRLSAEILPRLEVWPKTFLKNGGPKDESVALFFFPSS 367

Query: 192 KHFDSYDYRGLMNYMINNDLALKGNLDGVELLIFPSNILPERSQLWNQMMFLWGVFK 248
           +  D   +  L++ M  ND A++  L+  ELL+F S +LP+ S  +N   +LWGVFK
Sbjct: 368 ESNDEKVFDSLVDKMKKNDSAMRCVLNDAELLLFTSYMLPKDSWTFNSKYYLWGVFK 424


>AT5G61090.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:24574902-24577585
           REVERSE LENGTH=657
          Length = 657

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 19/217 (8%)

Query: 95  RDLAQVEAATLLQGLVVPNTDHSWLGKFLIHNSEGIP-WNCDGVLAHLSNCASLEVREVF 153
           R +++ E + LLQ L  P  + +W G+  I +S   P ++C+      SN     +R   
Sbjct: 270 RSVSEEELSELLQYL--PAQNPTWNGR--IMDSASPPEFDCEFWSKPASNIRRKALRRS- 324

Query: 154 DRLPGIIILEELPRVRIWPPQFMGSQVTGENIALYFFAKHFDSYDYRG----LMNYMINN 209
             +P ++ +E LP   I      G   T  N+ +Y F     +  + G    L   M+  
Sbjct: 325 KAMPALLKVELLPTCHILN-DVSGRSPTLLNVEMYLFPDEKKTERFTGEHATLFKAMVTR 383

Query: 210 DLALKGNLDGVELLIFPSNILPERSQLWNQMM-----FLWGVFKVQKVNNSANTPVSNSL 264
            +  K N++G ELLIF S +L + SQ           FLWG F +Q  N+    P + S 
Sbjct: 384 KVMAKANINGTELLIFSSKLLDKTSQFLINTQKKTENFLWGFF-LQTKNSLGLVPETAS- 441

Query: 265 KQGNGDTVKRGAIDLNAYTEDENVGTNLNLAVQGRST 301
            Q + D    G +D++   E       L L  + + T
Sbjct: 442 -QIDNDFDDGGVVDMDLDNECLTPRVALKLITESQKT 477