Miyakogusa Predicted Gene

Lj5g3v0780820.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0780820.2 tr|Q065N0|Q065N0_9SYNE ATPase OS=Synechococcus
sp. BL107 GN=BL107_14855 PE=3 SV=1,28.51,1e-18,no description,NULL;
seg,NULL; ABC_membrane,ABC transporter, transmembrane domain; ABC
transporter t,CUFF.53952.2
         (422 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03910.1 | Symbols: ATATH12, ATH12 | ABC2 homolog 12 | chr5:1...   342   4e-94

>AT5G03910.1 | Symbols: ATATH12, ATH12 | ABC2 homolog 12 |
           chr5:1054313-1057105 REVERSE LENGTH=634
          Length = 634

 Score =  342 bits (876), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 161/331 (48%), Positives = 232/331 (70%), Gaps = 8/331 (2%)

Query: 100 LRIQSSTKTQQTLQFLKPYLASQHKPILYGWLCSAISVYSLSNLLSRFSX--------XX 151
           LR  ++  + + L+ +KPYL S+ K +L GWLCS +SV SLS ++ R             
Sbjct: 50  LRANTTVNSLKALETIKPYLQSESKTVLLGWLCSCVSVVSLSQIVPRLGSFTSNLNANAA 109

Query: 152 XXXXXXXXXXXLGGFVLARLVATYAQHALLWEASLHAVYNVRVDVFDRVLQRELAYFEAN 211
                      L G VLA++VA Y Q A LWEA+L+ VY +RV  + RVL+REL +FE  
Sbjct: 110 SLTKLKGECLVLAGLVLAKVVAYYLQQAFLWEAALNTVYKIRVFAYRRVLERELEFFEGG 169

Query: 212 DAVSAGDIAYRVTAEASDLATTLYTLLNTIVPSTLQLSAMVMQMLAISPVLSLISATVIP 271
           + +S+GDIAYR+TAEAS++A T+Y LLNT+VPS +Q+S M   M+  SP L+L+SA VIP
Sbjct: 170 NGISSGDIAYRITAEASEVADTIYALLNTVVPSAIQISVMTAHMIVASPALTLVSAMVIP 229

Query: 272 CMGLVVVFLGQELRKISKESHLSVAAISSYLNEMLPAILFVKANNAELCESARFKRLALT 331
            + L++ +LG  LRKIS+++ ++ A +S+YLNE+LPAILFVKANNAE+ ES RF+R A  
Sbjct: 230 SVALLIAYLGDRLRKISRKAQIASAQLSTYLNEVLPAILFVKANNAEISESVRFQRFARA 289

Query: 332 DYSAKLNKKRMKAIIPQVIQAIYLGVLSILCAGSLVISRGSFDRRSLISFVTSLLFLIEP 391
           D   +  KK+MK++IPQ++Q +YLG LSI C G+++++  S    +++SFV SL FLI+P
Sbjct: 290 DLDERFKKKKMKSLIPQIVQVMYLGSLSIFCVGAVILAGSSLSSSAIVSFVASLAFLIDP 349

Query: 392 IQDVGKAYNEWRQGEPAVERLVALTTFKNEL 422
           +QD+GKAYNE +QGEPA+ERL  LT+ ++++
Sbjct: 350 VQDLGKAYNELKQGEPAIERLFDLTSLESKV 380