Miyakogusa Predicted Gene

Lj5g3v0746870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0746870.1 Non Chatacterized Hit- tr|O22175|O22175_ARATH
Putative retroelement pol polyprotein OS=Arabidopsis
t,37.25,0.0000000002,INTEGRASE,Integrase, catalytic core; seg,NULL; no
description,NULL; rve,Integrase, catalytic core; g,CUFF.53967.1
         (498 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like p...    92   7e-19
ATMG00820.1 | Symbols: ORF170 | Reverse transcriptase (RNA-depen...    59   5e-09

>AT4G23160.1 | Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like
           protein kinase) 8 | chr4:12129485-12134086 FORWARD
           LENGTH=1262
          Length = 1262

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 70/112 (62%), Gaps = 8/112 (7%)

Query: 392 SQVPSPTQVPTRRSSRQVRAPSYLQDYVCQ-----TQYPLHHYLTYDKLSPTYRNYVLTV 446
           + VP P+      S R+ R P+YLQDY C      T + +  +L+Y+K+SP Y ++++ +
Sbjct: 24  NDVPEPS---VHTSHRRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCI 80

Query: 447 AEIYEPQFFHQAVKYPEWRQAMKEEIDSLEANNTWSIVSLPADKKVIGCKWV 498
           A+  EP  +++A ++  W  AM +EI ++E  +TW I +LP +KK IGCKWV
Sbjct: 81  AKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWV 132


>ATMG00820.1 | Symbols: ORF170 | Reverse transcriptase
           (RNA-dependent DNA polymerase) | chrM:228573-229085
           REVERSE LENGTH=170
          Length = 170

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 433 DKLSPTYRNYVLTVAEIYEPQFFHQAVKYPEWRQAMKEEIDSLEANNTWSIVSLPADKKV 492
           +KL+P Y   + T  +  EP+    A+K P W QAM+EE+D+L  N TW +V  P ++ +
Sbjct: 10  NKLNPKYSLTITTTIK-KEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNI 68

Query: 493 IGCKWV 498
           +GCKWV
Sbjct: 69  LGCKWV 74