Miyakogusa Predicted Gene

Lj5g3v0712220.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0712220.1 Non Chatacterized Hit- tr|I1I599|I1I599_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,43.08,2e-18,seg,NULL; Myb_DNA-bind_4,NULL; MYB_LIKE,Myb-like
domain; FAMILY NOT NAMED,NULL,CUFF.53853.1
         (454 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03680.1 | Symbols: PTL | Duplicated homeodomain-like superfa...   238   9e-63
AT3G10000.1 | Symbols: EDA31 | Homeodomain-like superfamily prot...   225   4e-59
AT3G10000.2 | Symbols: EDA31 | Homeodomain-like superfamily prot...   198   6e-51
AT1G76880.1 | Symbols:  | Duplicated homeodomain-like superfamil...   128   7e-30
AT1G33240.1 | Symbols: AT-GTL1, AT-GTL2, GTL1 | GT-2-like 1 | ch...   119   3e-27
AT1G76890.2 | Symbols: GT2, AT-GT2 | Duplicated homeodomain-like...   118   1e-26
AT5G28300.1 | Symbols:  | Duplicated homeodomain-like superfamil...    67   2e-11
AT5G47660.1 | Symbols:  | Homeodomain-like superfamily protein |...    65   9e-11
AT3G25990.1 | Symbols:  | Homeodomain-like superfamily protein |...    54   3e-07
AT5G01380.1 | Symbols:  | Homeodomain-like superfamily protein |...    50   3e-06

>AT5G03680.1 | Symbols: PTL | Duplicated homeodomain-like
           superfamily protein | chr5:957858-960760 FORWARD
           LENGTH=591
          Length = 591

 Score =  238 bits (606), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 129/254 (50%), Positives = 150/254 (59%), Gaps = 12/254 (4%)

Query: 128 RWPRQETLTLLEVRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYK 187
           RWPRQETLTLLE+RSRLD KFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYK
Sbjct: 119 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYK 178

Query: 188 YYKKTKEGKAGRHDGKHYRFYRQLEALYGEN---------STNTAGSTLH-FQTNQEM-- 235
           YY+KTKEGKAGR DGKHYRF+RQLEALYG++         +T    S LH F T   M  
Sbjct: 179 YYRKTKEGKAGRQDGKHYRFFRQLEALYGDSNNLVSCPNHNTQFMSSALHGFHTQNPMNV 238

Query: 236 FQTHQNNKHCDTSTSLTNSTXXXXXXXXXXXXXXXXXXXXCMXXXXXXXXXWKVKIKEFI 295
             T  N  + D+      S                                WK KIKEFI
Sbjct: 239 TTTTSNIHNVDSVHGFHQSLSLSNNYNSSELELMTSSSEGNDSSSRRKKRSWKAKIKEFI 298

Query: 296 DLQVKKLVEKQEEWMDKIVKTMXXXXXXXXXXXXXXXXXXXXXXXXXXXFWAKERAWIEA 355
           D  +K+L+E+Q+ W++K+ K +                           FWAKERA +EA
Sbjct: 299 DTNMKRLIERQDVWLEKLTKVIEDKEEQRMMKEEEWRKIEAARIDKEHLFWAKERARMEA 358

Query: 356 RDAALMEALQNVTG 369
           RD A++EALQ +TG
Sbjct: 359 RDVAVIEALQYLTG 372


>AT3G10000.1 | Symbols: EDA31 | Homeodomain-like superfamily protein
           | chr3:3076874-3078907 FORWARD LENGTH=481
          Length = 481

 Score =  225 bits (574), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 158/416 (37%), Positives = 201/416 (48%), Gaps = 79/416 (18%)

Query: 115 ETAACFGG------DASTGRWPRQETLTLLEVRSRLDPKFKEANQKGPLWDEVSRIMSEE 168
           ++  C GG         TGRWPRQETL LLEVRSRLD KFKEANQKGPLWDEVSRIMSEE
Sbjct: 69  QSGGCVGGFSGFTDGGGTGRWPRQETLMLLEVRSRLDHKFKEANQKGPLWDEVSRIMSEE 128

Query: 169 HGYQRSGKKCREKFENLYKYYKKTKEGKAG-RHDGKHYRFYRQLEALYGENS-------- 219
           HGY RSGKKCREKFENLYKYYKKTKEGK+G R DGK+YRF+RQLEA+YGE+         
Sbjct: 129 HGYTRSGKKCREKFENLYKYYKKTKEGKSGRRQDGKNYRFFRQLEAIYGESKDSVSCYNN 188

Query: 220 -----TNTAGSTLHFQTNQEMFQTHQNNKHCDTSTSLTNSTXXXXXXXXXXXXXXXXXXX 274
                TN   S         +   HQN    +T+T   + +                   
Sbjct: 189 TQFIMTNALHSNFRASNIHNIVPHHQNPLMTNTNTQ--SQSLSISNNFNSSSDLDLTSSS 246

Query: 275 XCMXXXXXXXXXWKVKIKEFIDLQVKKLVEKQEEWMDKIVKTMXXXXXXXXXXXXXXXXX 334
                       WK KIKEFI + +++L+EKQ+ W++K++K +                 
Sbjct: 247 EGNETTKREGMHWKEKIKEFIGVHMERLIEKQDFWLEKLMKIVEDKEHQRMLREEEWRRI 306

Query: 335 XXXXXXXXXXFWAKERAWIEARDAALMEALQNVTGSSFPYNNNNDHQSCLHNQGSN---- 390
                     FW KER  IEARD A++ ALQ +TG +    +++     ++  GS+    
Sbjct: 307 EAERIDKERSFWTKERERIEARDVAVINALQYLTGRALIRPDSSSPTERINGNGSDKMMA 366

Query: 391 ---YCD-----------INDQRKE-------------------NVGKAQTSD-------- 409
              + D           +N +RKE                   N  + + +D        
Sbjct: 367 DNEFADEGNKGKMDKKQMNKKRKEKWSSHGGNHPRTKENMMIYNNQETKINDFCRDDDQC 426

Query: 410 ---GSSPSNF-NVGN------VAPNDSCNFPFLMSEGG-NWWDSYGLKLSKANQNQ 454
              G SPSN  N G       +A +  C FP L  EG  N W+ YGLK  K N +Q
Sbjct: 427 HHEGYSPSNSKNAGTPSCSNAMAASTKC-FPLLEGEGDQNLWEGYGLKQRKENNHQ 481


>AT3G10000.2 | Symbols: EDA31 | Homeodomain-like superfamily protein
           | chr3:3076874-3078907 FORWARD LENGTH=471
          Length = 471

 Score =  198 bits (504), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 149/416 (35%), Positives = 192/416 (46%), Gaps = 89/416 (21%)

Query: 115 ETAACFGG------DASTGRWPRQETLTLLEVRSRLDPKFKEANQKGPLWDEVSRIMSEE 168
           ++  C GG         TGRWPRQETL LLEVRSRLD KFKEANQKGPLWDEVS      
Sbjct: 69  QSGGCVGGFSGFTDGGGTGRWPRQETLMLLEVRSRLDHKFKEANQKGPLWDEVS------ 122

Query: 169 HGYQRSGKKCREKFENLYKYYKKTKEGKAG-RHDGKHYRFYRQLEALYGENS-------- 219
               RSGKKCREKFENLYKYYKKTKEGK+G R DGK+YRF+RQLEA+YGE+         
Sbjct: 123 ----RSGKKCREKFENLYKYYKKTKEGKSGRRQDGKNYRFFRQLEAIYGESKDSVSCYNN 178

Query: 220 -----TNTAGSTLHFQTNQEMFQTHQNNKHCDTSTSLTNSTXXXXXXXXXXXXXXXXXXX 274
                TN   S         +   HQN    +T+T   + +                   
Sbjct: 179 TQFIMTNALHSNFRASNIHNIVPHHQNPLMTNTNTQ--SQSLSISNNFNSSSDLDLTSSS 236

Query: 275 XCMXXXXXXXXXWKVKIKEFIDLQVKKLVEKQEEWMDKIVKTMXXXXXXXXXXXXXXXXX 334
                       WK KIKEFI + +++L+EKQ+ W++K++K +                 
Sbjct: 237 EGNETTKREGMHWKEKIKEFIGVHMERLIEKQDFWLEKLMKIVEDKEHQRMLREEEWRRI 296

Query: 335 XXXXXXXXXXFWAKERAWIEARDAALMEALQNVTGSSFPYNNNNDHQSCLHNQGSN---- 390
                     FW KER  IEARD A++ ALQ +TG +    +++     ++  GS+    
Sbjct: 297 EAERIDKERSFWTKERERIEARDVAVINALQYLTGRALIRPDSSSPTERINGNGSDKMMA 356

Query: 391 ---YCD-----------INDQRKE-------------------NVGKAQTSD-------- 409
              + D           +N +RKE                   N  + + +D        
Sbjct: 357 DNEFADEGNKGKMDKKQMNKKRKEKWSSHGGNHPRTKENMMIYNNQETKINDFCRDDDQC 416

Query: 410 ---GSSPSNF-NVGN------VAPNDSCNFPFLMSEGG-NWWDSYGLKLSKANQNQ 454
              G SPSN  N G       +A +  C FP L  EG  N W+ YGLK  K N +Q
Sbjct: 417 HHEGYSPSNSKNAGTPSCSNAMAASTKC-FPLLEGEGDQNLWEGYGLKQRKENNHQ 471


>AT1G76880.1 | Symbols:  | Duplicated homeodomain-like superfamily
           protein | chr1:28865594-28867931 FORWARD LENGTH=603
          Length = 603

 Score =  128 bits (322), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 87/121 (71%), Gaps = 10/121 (8%)

Query: 120 FGGDASTGRWPRQETLTLLEVRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCR 179
           FGG+    RWPRQETL LL++RS +   F++A+ KGPLW+EVSR M+E HGY R+ KKC+
Sbjct: 57  FGGN----RWPRQETLALLKIRSDMGIAFRDASVKGPLWEEVSRKMAE-HGYIRNAKKCK 111

Query: 180 EKFENLYKYYKKTKEGKAGRHDGKHYRFYRQLEALYGENSTNTAGSTLHFQTNQEMFQTH 239
           EKFEN+YKY+K+TKEG+ G+ +GK YRF+ QLEAL  +++T     +LH    Q   +  
Sbjct: 112 EKFENVYKYHKRTKEGRTGKSEGKTYRFFDQLEALESQSTT-----SLHHHQQQTPLRPQ 166

Query: 240 Q 240
           Q
Sbjct: 167 Q 167



 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 2/98 (2%)

Query: 121 GGDASTGRWPRQETLTLLEVRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCRE 180
              AS+ RWP+ E   L+++R+ LD K++E   KGPLW+E+S  M    G+ R+ K+C+E
Sbjct: 401 AASASSSRWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGM-RRLGFNRNSKRCKE 459

Query: 181 KFENLYKYYKKTKEGKAGR-HDGKHYRFYRQLEALYGE 217
           K+EN+ KY+KK KE    R  D K   ++ QL+ALY E
Sbjct: 460 KWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRE 497


>AT1G33240.1 | Symbols: AT-GTL1, AT-GTL2, GTL1 | GT-2-like 1 |
           chr1:12051859-12054320 REVERSE LENGTH=669
          Length = 669

 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 68/87 (78%), Gaps = 1/87 (1%)

Query: 128 RWPRQETLTLLEVRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYK 187
           RWPR+ETL LL +RS +D  F++A  K PLW+ VSR + E  GY+RS KKC+EKFEN+ K
Sbjct: 62  RWPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLE-LGYKRSSKKCKEKFENVQK 120

Query: 188 YYKKTKEGKAGRHDGKHYRFYRQLEAL 214
           YYK+TKE + GRHDGK Y+F+ QLEAL
Sbjct: 121 YYKRTKETRGGRHDGKAYKFFSQLEAL 147



 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 59/89 (66%), Gaps = 2/89 (2%)

Query: 128 RWPRQETLTLLEVRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYK 187
           RWP+ E L L+ +RS ++P++++   KG LW+E+S  M +  GY R+ K+C+EK+EN+ K
Sbjct: 435 RWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSM-KRMGYNRNAKRCKEKWENINK 493

Query: 188 YYKKTKEGKAGR-HDGKHYRFYRQLEALY 215
           YYKK KE    R  D K   ++ +L+ LY
Sbjct: 494 YYKKVKESNKKRPQDAKTCPYFHRLDLLY 522


>AT1G76890.2 | Symbols: GT2, AT-GT2 | Duplicated homeodomain-like
           superfamily protein | chr1:28873211-28875203 REVERSE
           LENGTH=575
          Length = 575

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 70/94 (74%), Gaps = 1/94 (1%)

Query: 121 GGDASTGRWPRQETLTLLEVRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCRE 180
           G  +   RWPR ETL LL +RS +D  F+++  K PLW+E+SR M E  GY+RS KKC+E
Sbjct: 34  GAGSGGNRWPRPETLALLRIRSEMDKAFRDSTLKAPLWEEISRKMME-LGYKRSSKKCKE 92

Query: 181 KFENLYKYYKKTKEGKAGRHDGKHYRFYRQLEAL 214
           KFEN+YKY+K+TKEG+ G+ +GK YRF+ +LEA 
Sbjct: 93  KFENVYKYHKRTKEGRTGKSEGKTYRFFEELEAF 126



 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 2/100 (2%)

Query: 125 STGRWPRQETLTLLEVRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFEN 184
           S+ RWP+ E   L+ +R  L+  ++E   KGPLW+E+S  M    GY RS K+C+EK+EN
Sbjct: 394 SSSRWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGM-RRLGYNRSAKRCKEKWEN 452

Query: 185 LYKYYKKTKEGKAGRH-DGKHYRFYRQLEALYGENSTNTA 223
           + KY+KK KE    R  D K   ++ QLEALY E + + A
Sbjct: 453 INKYFKKVKESNKKRPLDSKTCPYFHQLEALYNERNKSGA 492


>AT5G28300.1 | Symbols:  | Duplicated homeodomain-like superfamily
           protein | chr5:10292789-10295101 REVERSE LENGTH=619
          Length = 619

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 12/101 (11%)

Query: 128 RWPRQETLTLLEVRSRL----DPKFKEAN------QKGPLWDEVSRIMSEEHGYQRSGKK 177
           RWP+ E L L+ +R  +    D   K+ N      +  PLW+ +S+ M E  GY+RS K+
Sbjct: 459 RWPKDEVLALINIRRSISNMNDDDHKDENSLSTSSKAVPLWERISKKMLE-IGYKRSAKR 517

Query: 178 CREKFENLYKYYKKTKEGKAGR-HDGKHYRFYRQLEALYGE 217
           C+EK+EN+ KY++KTK+    R  D +   ++ QL ALY +
Sbjct: 518 CKEKWENINKYFRKTKDVNKKRPLDSRTCPYFHQLTALYSQ 558


>AT5G47660.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:19313008-19314636 FORWARD LENGTH=398
          Length = 398

 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 5/97 (5%)

Query: 128 RWPRQETLTLLEVRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYK 187
           RWP++E   L+  RS  D + K    KG +WDE+S  M +E GY+RS KKC+EK+EN+ K
Sbjct: 303 RWPQEEVQALISSRS--DVEEKTGINKGAIWDEISARM-KERGYERSAKKCKEKWENMNK 359

Query: 188 YYKKTKEGKAGRHDGKHYRFYRQLEALYGENSTNTAG 224
           YY++  EG  G+   +H +     E L     T ++G
Sbjct: 360 YYRRVTEG--GQKQPEHSKTRSYFEKLGNFYKTISSG 394


>AT3G25990.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:9504846-9506703 REVERSE LENGTH=372
          Length = 372

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 8/132 (6%)

Query: 129 WPRQETLTLLEVRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKY 188
           W + ET TL+ +R  +D  F  +     LW+++S+ M E+ G+ RS   C +K+ N+ K 
Sbjct: 55  WAQDETRTLISLRREMDNLFNTSKSNKHLWEQISKKMREK-GFDRSPSMCTDKWRNILKE 113

Query: 189 YKKTK--EGKAGRHDGKHYRFYRQLEALYGENSTNTA-----GSTLHFQTNQEMFQTHQN 241
           +KK K  E KA         +Y ++E ++ E     A      +T       + F    +
Sbjct: 114 FKKAKQHEDKATSGGSTKMSYYNEIEDIFRERKKKVAFYKSPATTTPSSAKVDSFMQFTD 173

Query: 242 NKHCDTSTSLTN 253
               DT  S T+
Sbjct: 174 KGFEDTGISFTS 185


>AT5G01380.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:155784-157451 REVERSE LENGTH=323
          Length = 323

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 6/89 (6%)

Query: 129 WPRQETLTLLEVRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKY 188
           W  +ET  LL +R  LD  F E  +   LW+ V+  M+++ G+ RS ++C+ K++NL   
Sbjct: 52  WSIEETKELLAIREELDQTFMETKRNKLLWEVVAAKMADK-GFVRSAEQCKSKWKNLVTR 110

Query: 189 YK--KTKEGKAGRHDGKHYRFYRQLEALY 215
           YK  +T E  A R   + + FY ++++++
Sbjct: 111 YKACETTEPDAIR---QQFPFYNEIQSIF 136