Miyakogusa Predicted Gene

Lj5g3v0711010.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0711010.1 Non Chatacterized Hit- tr|A3BQA8|A3BQA8_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,34.46,2e-18,ZINC_FINGER_C2H2_1,Zinc finger, C2H2; PRE-MRNA
CLEAVAGE COMPLEX II,NULL; seg,NULL,CUFF.53877.1
         (683 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36480.1 | Symbols:  | ENTH/VHS family protein | chr2:1530311...   162   7e-40
AT2G36480.2 | Symbols:  | ENTH/VHS family protein | chr2:1530256...   162   7e-40
AT2G36480.3 | Symbols:  | ENTH/VHS family protein | chr2:1530256...   162   1e-39
AT4G04885.1 | Symbols: PCFS4 | PCF11P-similar protein 4 | chr4:2...   122   7e-28
AT1G66500.1 | Symbols:  | Pre-mRNA cleavage complex II | chr1:24...   101   2e-21
AT5G43620.1 | Symbols:  | Pre-mRNA cleavage complex II | chr5:17...   100   3e-21

>AT2G36480.1 | Symbols:  | ENTH/VHS family protein |
           chr2:15303114-15306274 REVERSE LENGTH=830
          Length = 830

 Score =  162 bits (410), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 114/188 (60%), Gaps = 15/188 (7%)

Query: 492 SESTSTEIRNFIGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWH 551
           SE++ +E ++ IG +F+ D IRELHPSVIS LFDD PH C+ CS++LK +E+ DRH+E H
Sbjct: 644 SETSKSEPKDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH 703

Query: 552 ATREREHSGLIKASR-WYLKSSDWVVGKVESLSENEFADSVDRYGKETDRNQEDAM-VLA 609
             ++ E SG     R W+ K  +W+  K   L E E+ + +     E +   ED   V A
Sbjct: 704 DKKKLELSGTNSKCRVWFPKVDNWIAAKAGEL-EPEYEEVL----SEPESAIEDCQAVAA 758

Query: 610 DENQCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGGGPIIHARCL 669
           DE QC C+LCGE+FE+++ QE  +WMFKGA Y+ N   N        S   GPI+H  CL
Sbjct: 759 DETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPAN--------SEASGPIVHTGCL 810

Query: 670 SENPVSSV 677
           + + + S+
Sbjct: 811 TTSSLQSL 818



 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 112/256 (43%), Gaps = 43/256 (16%)

Query: 6   TGGRVAELGSDKSGYNKAAGAGVAGTISGQRNGLSIKNNFLNTEASMILDARNQ-PRQNI 64
            G R+ + G +K  Y   A       IS QR+GL  K+   N   + + +  +  P +NI
Sbjct: 206 VGSRITDDGCEKQWY--GATNRDPDLISDQRDGLHSKSRTSNYATARVENLESSGPSRNI 263

Query: 65  NSLQRGVMSNSWKHSEEEEFMWDEMNAGLTGHDAASVPNNLSKDSWTSDDENLEVEDNHH 124
                GV  +SWK+SEEEEFMWD M++ L+  D A++     K+   + DE+  +E  +H
Sbjct: 264 -----GVPYDSWKNSEEEEFMWD-MHSRLSETDVATIN---PKNELHAPDESERLESENH 314

Query: 125 QSRNPFGANVDTEMSIESQATERKQLPAFRPHPSLSWKLQEQHSIDELNQKPGHSDGFVS 184
             + P  + +D               P F P  S +    EQ     +    GH   F S
Sbjct: 315 LLKRPRFSALD---------------PRFDPANSTNSYSSEQKDPSSI----GHW-AFSS 354

Query: 185 TLGALPTNTNSAATRMGNRSLLPKATIGLAGNLGQLHSVGD-ESPSRESSLRQQ-SPPPV 242
                 TN  S ATR G   + P+  +  +G L    S  D +SP  +S+ +Q  +   V
Sbjct: 355 ------TNATSTATRKG---IQPQPRVASSGILPSSGSGSDRQSPLHDSTSKQNVTKQDV 405

Query: 243 GKFHRSQLRDLQSGSF 258
            + H    RD ++  F
Sbjct: 406 RRAHSLPQRDPRASRF 421


>AT2G36480.2 | Symbols:  | ENTH/VHS family protein |
           chr2:15302567-15306274 REVERSE LENGTH=844
          Length = 844

 Score =  162 bits (410), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 114/188 (60%), Gaps = 15/188 (7%)

Query: 492 SESTSTEIRNFIGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWH 551
           SE++ +E ++ IG +F+ D IRELHPSVIS LFDD PH C+ CS++LK +E+ DRH+E H
Sbjct: 644 SETSKSEPKDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH 703

Query: 552 ATREREHSGLIKASR-WYLKSSDWVVGKVESLSENEFADSVDRYGKETDRNQEDAM-VLA 609
             ++ E SG     R W+ K  +W+  K   L E E+ + +     E +   ED   V A
Sbjct: 704 DKKKLELSGTNSKCRVWFPKVDNWIAAKAGEL-EPEYEEVLS----EPESAIEDCQAVAA 758

Query: 610 DENQCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGGGPIIHARCL 669
           DE QC C+LCGE+FE+++ QE  +WMFKGA Y+ N   N        S   GPI+H  CL
Sbjct: 759 DETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPAN--------SEASGPIVHTGCL 810

Query: 670 SENPVSSV 677
           + + + S+
Sbjct: 811 TTSSLQSL 818



 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 112/256 (43%), Gaps = 43/256 (16%)

Query: 6   TGGRVAELGSDKSGYNKAAGAGVAGTISGQRNGLSIKNNFLNTEASMILDARNQ-PRQNI 64
            G R+ + G +K  Y   A       IS QR+GL  K+   N   + + +  +  P +NI
Sbjct: 206 VGSRITDDGCEKQWY--GATNRDPDLISDQRDGLHSKSRTSNYATARVENLESSGPSRNI 263

Query: 65  NSLQRGVMSNSWKHSEEEEFMWDEMNAGLTGHDAASVPNNLSKDSWTSDDENLEVEDNHH 124
                GV  +SWK+SEEEEFMWD M++ L+  D A++     K+   + DE+  +E  +H
Sbjct: 264 -----GVPYDSWKNSEEEEFMWD-MHSRLSETDVATIN---PKNELHAPDESERLESENH 314

Query: 125 QSRNPFGANVDTEMSIESQATERKQLPAFRPHPSLSWKLQEQHSIDELNQKPGHSDGFVS 184
             + P  + +D               P F P  S +    EQ     +    GH   F S
Sbjct: 315 LLKRPRFSALD---------------PRFDPANSTNSYSSEQKDPSSI----GHW-AFSS 354

Query: 185 TLGALPTNTNSAATRMGNRSLLPKATIGLAGNLGQLHSVGD-ESPSRESSLRQQ-SPPPV 242
                 TN  S ATR G   + P+  +  +G L    S  D +SP  +S+ +Q  +   V
Sbjct: 355 ------TNATSTATRKG---IQPQPRVASSGILPSSGSGSDRQSPLHDSTSKQNVTKQDV 405

Query: 243 GKFHRSQLRDLQSGSF 258
            + H    RD ++  F
Sbjct: 406 RRAHSLPQRDPRASRF 421


>AT2G36480.3 | Symbols:  | ENTH/VHS family protein |
           chr2:15302567-15306274 REVERSE LENGTH=886
          Length = 886

 Score =  162 bits (409), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 114/188 (60%), Gaps = 15/188 (7%)

Query: 492 SESTSTEIRNFIGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWH 551
           SE++ +E ++ IG +F+ D IRELHPSVIS LFDD PH C+ CS++LK +E+ DRH+E H
Sbjct: 644 SETSKSEPKDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH 703

Query: 552 ATREREHSGLIKASR-WYLKSSDWVVGKVESLSENEFADSVDRYGKETDRNQEDAM-VLA 609
             ++ E SG     R W+ K  +W+  K   L E E+ + +     E +   ED   V A
Sbjct: 704 DKKKLELSGTNSKCRVWFPKVDNWIAAKAGEL-EPEYEEVLS----EPESAIEDCQAVAA 758

Query: 610 DENQCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGGGPIIHARCL 669
           DE QC C+LCGE+FE+++ QE  +WMFKGA Y+ N   N        S   GPI+H  CL
Sbjct: 759 DETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPAN--------SEASGPIVHTGCL 810

Query: 670 SENPVSSV 677
           + + + S+
Sbjct: 811 TTSSLQSL 818



 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 103/233 (44%), Gaps = 42/233 (18%)

Query: 6   TGGRVAELGSDKSGYNKAAGAGVAGTISGQRNGLSIKNNFLNTEASMILDARNQ-PRQNI 64
            G R+ + G +K  Y   A       IS QR+GL  K+   N   + + +  +  P +NI
Sbjct: 206 VGSRITDDGCEKQWY--GATNRDPDLISDQRDGLHSKSRTSNYATARVENLESSGPSRNI 263

Query: 65  NSLQRGVMSNSWKHSEEEEFMWDEMNAGLTGHDAASVPNNLSKDSWTSDDENLEVEDNHH 124
                GV  +SWK+SEEEEFMWD M++ L+  D A++     K+   + DE+  +E  +H
Sbjct: 264 -----GVPYDSWKNSEEEEFMWD-MHSRLSETDVATIN---PKNELHAPDESERLESENH 314

Query: 125 QSRNPFGANVDTEMSIESQATERKQLPAFRPHPSLSWKLQEQHSIDELNQKPGHSDGFVS 184
             + P  + +D               P F P  S +    EQ     +    GH   F S
Sbjct: 315 LLKRPRFSALD---------------PRFDPANSTNSYSSEQKDPSSI----GHW-AFSS 354

Query: 185 TLGALPTNTNSAATRMGNRSLLPKATIGLAGNLGQLHSVGD-ESPSRESSLRQ 236
                 TN  S ATR G   + P+  +  +G L    S  D +SP  +S+ +Q
Sbjct: 355 ------TNATSTATRKG---IQPQPRVASSGILPSSGSGSDRQSPLHDSTSKQ 398


>AT4G04885.1 | Symbols: PCFS4 | PCF11P-similar protein 4 |
           chr4:2472083-2475417 FORWARD LENGTH=808
          Length = 808

 Score =  122 bits (307), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 93/173 (53%), Gaps = 10/173 (5%)

Query: 503 IGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWHATREREHSGLI 562
           +G EF  D+++  + S IS L+ D P  C+ C L+ K QE+  +H++WH T+ R      
Sbjct: 625 LGLEFDADMLKIRNESAISALYGDLPRQCTTCGLRFKCQEEHSKHMDWHVTKNRMSKNHK 684

Query: 563 K--ASRWYLKSSDWVVGKVESLSENEFADSVDRYGKETDRNQEDAMVLADENQCLCVLCG 620
           +  + +W++ +S W+ G  E+L        +        ++ ED  V ADE+Q  C LCG
Sbjct: 685 QNPSRKWFVSASMWLSG-AEALGAEAVPGFLPTEPTTEKKDDEDMAVPADEDQTSCALCG 743

Query: 621 ELFEEFYCQENGEWMFKGAVYV--PNSDINDDMGIRDASTGGGPIIHARCLSE 671
           E FE+FY  E  EWM+KGAVY+  P     D     D S   GPI+HA+C  E
Sbjct: 744 EPFEDFYSDETEEWMYKGAVYMNAPEESTTD----MDKSQ-LGPIVHAKCRPE 791


>AT1G66500.1 | Symbols:  | Pre-mRNA cleavage complex II |
           chr1:24811262-24812512 REVERSE LENGTH=416
          Length = 416

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 83/179 (46%), Gaps = 26/179 (14%)

Query: 503 IGFEF-KPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWHATREREHSGL 561
           +G  F  P  +   H SVI  L+ D P  CS C L+ K QE+  +H++WH  + R     
Sbjct: 227 VGLSFDNPSSLNVRHESVIKSLYSDMPRQCSSCGLRFKCQEEHSKHMDWHVRKNRSVKTT 286

Query: 562 I------KASR-WYLKSSDWVVGKV--ESLSENEFADSVDRYGKETDRNQEDAMVLADEN 612
                  K SR W   +S W+      E++    F   + +  K  D   +  MV ADE+
Sbjct: 287 TRLGQQPKKSRGWLASASLWLCAATGGETVEVASFGGEMQK-KKGKDEEPKQLMVPADED 345

Query: 613 QCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGGGPIIHARCLSE 671
           Q  C LC E FEEF+  E+ +WM+K AVY+               T  G I+H +C+ E
Sbjct: 346 QKNCALCVEPFEEFFSHEDDDWMYKDAVYL---------------TKNGRIVHVKCMPE 389


>AT5G43620.1 | Symbols:  | Pre-mRNA cleavage complex II |
           chr5:17522653-17523885 FORWARD LENGTH=410
          Length = 410

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 84/182 (46%), Gaps = 31/182 (17%)

Query: 503 IGFEF-KPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWHATREREHSGL 561
           +G  F  P  +   H SVI  L+ D P  C+ C ++ K QE+  +H++WH  + R     
Sbjct: 220 VGLSFDNPSSLNVRHESVIKSLYSDMPRQCTSCGVRFKCQEEHSKHMDWHVRKNRSVKTT 279

Query: 562 I------KASR-WYLKSSDWVV-----GKVESLSENEFADSVDRYGKETDRNQEDAMVLA 609
                  K SR W   +S W+      G VE  S   F     +   E D+ Q+  MV A
Sbjct: 280 TRLGQQPKKSRGWLASASLWLCAPTGGGTVEVAS---FGGGEMQKKNEKDQVQKQHMVPA 336

Query: 610 DENQCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGGGPIIHARCL 669
           DE+Q  C LC E FEEF+  E  +WM+K AVY+               T  G I+H +C+
Sbjct: 337 DEDQKNCALCVEPFEEFFSHEADDWMYKDAVYL---------------TKNGRIVHVKCM 381

Query: 670 SE 671
            E
Sbjct: 382 PE 383