Miyakogusa Predicted Gene
- Lj5g3v0709830.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0709830.3 Non Chatacterized Hit- tr|B9FEM7|B9FEM7_ORYSJ
Putative uncharacterized protein OS=Oryza sativa subsp,41.88,5e-18,no
description,DNA glycosylase; ENDONUCLEASE III-RELATED,NULL;
A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDO,CUFF.53869.3
(599 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G36490.1 | Symbols: DML1, ROS1 | demeter-like 1 | chr2:153082... 364 e-100
AT3G10010.1 | Symbols: DML2 | demeter-like 2 | chr3:3081999-3088... 192 5e-49
AT5G04560.1 | Symbols: DME | HhH-GPD base excision DNA repair fa... 163 3e-40
AT5G04560.2 | Symbols: DME | HhH-GPD base excision DNA repair fa... 163 3e-40
AT4G34060.2 | Symbols: DML3 | demeter-like protein 3 | chr4:1631... 107 3e-23
AT4G34060.1 | Symbols: DML3 | demeter-like protein 3 | chr4:1631... 107 3e-23
AT3G47830.1 | Symbols: | DNA glycosylase superfamily protein | ... 61 3e-09
>AT2G36490.1 | Symbols: DML1, ROS1 | demeter-like 1 |
chr2:15308259-15314272 REVERSE LENGTH=1393
Length = 1393
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 258/560 (46%), Positives = 326/560 (58%), Gaps = 92/560 (16%)
Query: 68 IEALAEQFRQLNISTD--QHALVPF------------QGSFI-----KKHHPRPKVDLDE 108
IE ++E R L+I+ + + ALVP+ G+ + KK PRPKVDLD+
Sbjct: 474 IETISELLRLLDINREHSETALVPYTMNSQIVLFGGGAGAIVPVTPVKKPRPRPKVDLDD 533
Query: 109 ETDKVWKLLMLDINSHGVDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWK 168
ETD+VWKLL+ +INS GVDG+DE KAKWWEEERNVFRGRADSFIARMHLVQGDRRF+ WK
Sbjct: 534 ETDRVWKLLLENINSEGVDGSDEQKAKWWEEERNVFRGRADSFIARMHLVQGDRRFTPWK 593
Query: 169 GSVVDSVVGVFLTQNVSDHLSSSAYMSLAARFPPK--PSSMRKTCHGEGTSLEVNEPQVQ 226
GSVVDSVVGVFLTQNVSDHLSSSA+MSLA++FP PSS GTS + P +Q
Sbjct: 594 GSVVDSVVGVFLTQNVSDHLSSSAFMSLASQFPVPFVPSSN----FDAGTS---SMPSIQ 646
Query: 227 I--VEPEENTECDVKLLNQSLHDQSFTTIDIAKHSGEKEAVESNDSCRITSSVT---DES 281
I ++ EE + + H+ S T+ + EK+ V SN++ R +S + ES
Sbjct: 647 ITYLDSEET------MSSPPDHNHSSVTLKNTQPDEEKDYVPSNETSRSSSEIAISAHES 700
Query: 282 NCRLPDSSQRNIKEHQSPMRSGLISTSIEELEDKSCYDSAGLEXXXXXXXXXXXXXXXXG 341
+ DS KE+ R G +S+E DK+ L
Sbjct: 701 VDKTTDS-----KEYVDSDRKG---SSVEV--DKTDEKCRVLNLFPSEDSALTCQHSMVS 750
Query: 342 DFSNDQNPEKIGSSSDSNSEIEDLSSTAMYNSVYSGTSFSKLLEIVSSTKFHEVNSEKSP 401
D QN E+ GSSS+ + E E Y TSF KLL+ V
Sbjct: 751 D--APQNTERAGSSSEIDLEGE-------YR-----TSFMKLLQGV-------------- 782
Query: 402 TEPNTAQIALGHSQTIASQVYPQEQSSHMQQSFFNISEQTQDLVNKERGLDLGDHKDTAR 461
Q++L S ++ + P + SS ++ F ++ E T+ V D + ++
Sbjct: 783 ------QVSLEDSNQVSPNMSPGDCSSEIK-GFQSMKEPTKSSV------DSSEPGCCSQ 829
Query: 462 SETNEISSTPITLK--SXXXXXXXXXXVDWDSLRLTAQAKAGKRERTENTMDTLDWDAVR 519
+ + +S TLK DWD LR AQA+AG RE+T +TMDT+DW A+R
Sbjct: 830 QDGDVLSCQKPTLKEKGKKVLKEEKKAFDWDCLRREAQARAGIREKTRSTMDTVDWKAIR 889
Query: 520 CADVNEIANTIKERGMNNRLAERIQGFLNRLVEKHGSIDLEWLRDVPPDQAKEYLLSFRG 579
ADV E+A TIK RGMN++LAERIQGFL+RLV HGSIDLEWLRDVPPD+AKEYLLSF G
Sbjct: 890 AADVKEVAETIKSRGMNHKLAERIQGFLDRLVNDHGSIDLEWLRDVPPDKAKEYLLSFNG 949
Query: 580 LGLKSVECVRLLTLHHLAFP 599
LGLKSVECVRLLTLHHLAFP
Sbjct: 950 LGLKSVECVRLLTLHHLAFP 969
>AT3G10010.1 | Symbols: DML2 | demeter-like 2 | chr3:3081999-3088195
REVERSE LENGTH=1332
Length = 1332
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 87/113 (76%), Positives = 99/113 (87%)
Query: 487 VDWDSLRLTAQAKAGKRERTENTMDTLDWDAVRCADVNEIANTIKERGMNNRLAERIQGF 546
VDWDSLR A++ KRERTE TMDT+DWDA+RC DV++IAN I +RGMNN LAERI+ F
Sbjct: 789 VDWDSLRKEAESGGRKRERTERTMDTVDWDALRCTDVHKIANIIIKRGMNNMLAERIKAF 848
Query: 547 LNRLVEKHGSIDLEWLRDVPPDQAKEYLLSFRGLGLKSVECVRLLTLHHLAFP 599
LNRLV+KHGSIDLEWLRDVPPD+AKEYLLS GLGLKSVECVRLL+LH +AFP
Sbjct: 849 LNRLVKKHGSIDLEWLRDVPPDKAKEYLLSINGLGLKSVECVRLLSLHQIAFP 901
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 121/169 (71%), Gaps = 16/169 (9%)
Query: 66 VDIEALAEQFRQLNISTD--------QHALVPFQGSF-----IKKH--HPRPKVDLDEET 110
+ I+A+ + F +L+I+ + + AL+ ++ S+ I K+ +PKV LD ET
Sbjct: 445 LTIDAITKLFEELDINKEGLCLPHNRETALILYKKSYEEQKAIVKYSKKQKPKVQLDPET 504
Query: 111 DKVWKLLMLDINSHGVDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWKGS 170
+VWKLLM I+ GVDG+DE+K KWWEEERN+F GRA+SFIARM +VQG+R FS WKGS
Sbjct: 505 SRVWKLLMSSIDCDGVDGSDEEKRKWWEEERNMFHGRANSFIARMRVVQGNRTFSPWKGS 564
Query: 171 VVDSVVGVFLTQNVSDHLSSSAYMSLAARFPPKPSSMRKTCHGE-GTSL 218
VVDSVVGVFLTQNV+DH SSSAYM LAA FP + + + +CH E G+S+
Sbjct: 565 VVDSVVGVFLTQNVADHSSSSAYMDLAAEFPVEWNFNKGSCHEEWGSSV 613
>AT5G04560.1 | Symbols: DME | HhH-GPD base excision DNA repair family
protein | chr5:1310671-1318091 FORWARD LENGTH=1729
Length = 1729
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 91/111 (81%)
Query: 489 WDSLRLTAQAKAGKRERTENTMDTLDWDAVRCADVNEIANTIKERGMNNRLAERIQGFLN 548
WDSLR + G++ER +N MD++D++A+R A ++EI+ IKERGMNN LA RI+ FL
Sbjct: 1192 WDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFLE 1251
Query: 549 RLVEKHGSIDLEWLRDVPPDQAKEYLLSFRGLGLKSVECVRLLTLHHLAFP 599
R+V+ HG IDLEWLR+ PPD+AK+YLLS RGLGLKSVECVRLLTLH+LAFP
Sbjct: 1252 RIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFP 1302
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/125 (68%), Positives = 98/125 (78%), Gaps = 4/125 (3%)
Query: 86 ALVPFQGSFIKKHHPRPKVDLDEETDKVWKLLMLDINSHGVDGTDEDKAKWWEEE-RNVF 144
ALVP++ KK PRPKVD+D+ET ++W LLM + D + K + W EE R VF
Sbjct: 683 ALVPYES---KKRKPRPKVDIDDETTRIWNLLMGKGDEKEGDEEKDKKKEKWWEEERRVF 739
Query: 145 RGRADSFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHLSSSAYMSLAARFPPKP 204
RGRADSFIARMHLVQGDRRFS WKGSVVDSV+GVFLTQNVSDHLSSSA+MSLAARFPPK
Sbjct: 740 RGRADSFIARMHLVQGDRRFSPWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPPKL 799
Query: 205 SSMRK 209
SS R+
Sbjct: 800 SSSRE 804
>AT5G04560.2 | Symbols: DME | HhH-GPD base excision DNA repair family
protein | chr5:1309786-1318091 FORWARD LENGTH=1987
Length = 1987
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 91/111 (81%)
Query: 489 WDSLRLTAQAKAGKRERTENTMDTLDWDAVRCADVNEIANTIKERGMNNRLAERIQGFLN 548
WDSLR + G++ER +N MD++D++A+R A ++EI+ IKERGMNN LA RI+ FL
Sbjct: 1450 WDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFLE 1509
Query: 549 RLVEKHGSIDLEWLRDVPPDQAKEYLLSFRGLGLKSVECVRLLTLHHLAFP 599
R+V+ HG IDLEWLR+ PPD+AK+YLLS RGLGLKSVECVRLLTLH+LAFP
Sbjct: 1510 RIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFP 1560
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/125 (68%), Positives = 98/125 (78%), Gaps = 4/125 (3%)
Query: 86 ALVPFQGSFIKKHHPRPKVDLDEETDKVWKLLMLDINSHGVDGTDEDKAKWWEEE-RNVF 144
ALVP++ KK PRPKVD+D+ET ++W LLM + D + K + W EE R VF
Sbjct: 941 ALVPYES---KKRKPRPKVDIDDETTRIWNLLMGKGDEKEGDEEKDKKKEKWWEEERRVF 997
Query: 145 RGRADSFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHLSSSAYMSLAARFPPKP 204
RGRADSFIARMHLVQGDRRFS WKGSVVDSV+GVFLTQNVSDHLSSSA+MSLAARFPPK
Sbjct: 998 RGRADSFIARMHLVQGDRRFSPWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPPKL 1057
Query: 205 SSMRK 209
SS R+
Sbjct: 1058 SSSRE 1062
>AT4G34060.2 | Symbols: DML3 | demeter-like protein 3 |
chr4:16314004-16318958 FORWARD LENGTH=957
Length = 957
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 487 VDWDSLRLTAQAKAGKRERTENTMDTLDWDAVRCADVNEIANTIKERGMNNRLAERIQGF 546
VDW++LR K G R E MD+++W VR + N + TIK+RG L+ERI F
Sbjct: 500 VDWNNLR-RMYTKEG--SRPEMHMDSVNWSDVRLSGQNVLETTIKKRGQFRILSERILKF 556
Query: 547 LNRLVEKHGSIDLEWLRDVPPDQAKEYLLSFRGLGLKSVECVRLLTLHHLAFP 599
LN V ++G+IDLEWLR+ P K YLL G+GLKS ECVRLL L H AFP
Sbjct: 557 LNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSAECVRLLGLKHHAFP 609
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 122/230 (53%), Gaps = 38/230 (16%)
Query: 59 PLGKSSDVDIEALAEQFRQLNISTDQHALVPFQGSFIKKHHPRPKVDLDEETDKVWKLLM 118
P+ K+ D I L + +L I+ ++ + KV+LD ET K W +LM
Sbjct: 311 PIKKTKD--IAKLIKDMGRLKINKKVTTMIKADKKLVTA-----KVNLDPETIKEWDVLM 363
Query: 119 LDINSHGVDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWKGSVVDSVVGV 178
++ + E +AKW ++ER +F+ R D FI RMH +QG+R+F +WKGSVVDSVVGV
Sbjct: 364 VNDSPSRSYDDKETEAKW-KKEREIFQTRIDLFINRMHRLQGNRKFKQWKGSVVDSVVGV 422
Query: 179 FLTQNVSDHLSSSAYMSLAARFPPKPSSMRKTCHGEGTSLEVNEPQVQIVEPEENTECDV 238
FLTQN +D+LSS+A+MS+AA+FP EG S + EPQ +++EC +
Sbjct: 423 FLTQNTTDYLSSNAFMSVAAKFPVDAR--------EGLSYYIEEPQ-----DAKSSECII 469
Query: 239 KLLNQSLHDQSFTTID----IAKHSGEKEAVESNDSCRITSSVTDESNCR 284
L D+S + ++ AK EK + I + D +N R
Sbjct: 470 ------LSDESISKVEDHENTAKRKNEKTGI-------IEDEIVDWNNLR 506
>AT4G34060.1 | Symbols: DML3 | demeter-like protein 3 |
chr4:16314004-16319254 FORWARD LENGTH=1044
Length = 1044
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 487 VDWDSLRLTAQAKAGKRERTENTMDTLDWDAVRCADVNEIANTIKERGMNNRLAERIQGF 546
VDW++LR K G R E MD+++W VR + N + TIK+RG L+ERI F
Sbjct: 500 VDWNNLR-RMYTKEG--SRPEMHMDSVNWSDVRLSGQNVLETTIKKRGQFRILSERILKF 556
Query: 547 LNRLVEKHGSIDLEWLRDVPPDQAKEYLLSFRGLGLKSVECVRLLTLHHLAFP 599
LN V ++G+IDLEWLR+ P K YLL G+GLKS ECVRLL L H AFP
Sbjct: 557 LNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSAECVRLLGLKHHAFP 609
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 116/211 (54%), Gaps = 31/211 (14%)
Query: 59 PLGKSSDVDIEALAEQFRQLNISTDQHALVPFQGSFIKKHHPRPKVDLDEETDKVWKLLM 118
P+ K+ D I L + +L I+ ++ + KV+LD ET K W +LM
Sbjct: 311 PIKKTKD--IAKLIKDMGRLKINKKVTTMIKADKKLVTA-----KVNLDPETIKEWDVLM 363
Query: 119 LDINSHGVDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWKGSVVDSVVGV 178
++ + E +AKW ++ER +F+ R D FI RMH +QG+R+F +WKGSVVDSVVGV
Sbjct: 364 VNDSPSRSYDDKETEAKW-KKEREIFQTRIDLFINRMHRLQGNRKFKQWKGSVVDSVVGV 422
Query: 179 FLTQNVSDHLSSSAYMSLAARFPPKPSSMRKTCHGEGTSLEVNEPQVQIVEPEENTECDV 238
FLTQN +D+LSS+A+MS+AA+FP EG S + EPQ +++EC +
Sbjct: 423 FLTQNTTDYLSSNAFMSVAAKFPVDAR--------EGLSYYIEEPQ-----DAKSSECII 469
Query: 239 KLLNQSLHDQSFTTID----IAKHSGEKEAV 265
L D+S + ++ AK EK +
Sbjct: 470 ------LSDESISKVEDHENTAKRKNEKTGI 494
>AT3G47830.1 | Symbols: | DNA glycosylase superfamily protein |
chr3:17647069-17648346 FORWARD LENGTH=293
Length = 293
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 515 WDAVRCADVNEIANTIKERGMNNRLAERIQGFLNRLVEKHGSIDLEWLRDVPPDQAKEYL 574
WD V A+ I N I+ G+ + A I+ LNRL + G + LE+LR + ++ K L
Sbjct: 128 WDDVLNAESKSIENAIRCGGLAPKKAVCIKNILNRLQNERGRLCLEYLRGLSVEEVKTEL 187
Query: 575 LSFRGLGLKSVECVRLLTLHHLAFP 599
F+G+G K+V CV + L H FP
Sbjct: 188 SHFKGVGPKTVSCVLMFNLQHNDFP 212