Miyakogusa Predicted Gene
- Lj5g3v0709830.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0709830.2 tr|G7KEG3|G7KEG3_MEDTR DNA glycosylase
OS=Medicago truncatula GN=MTR_5g095880 PE=4 SV=1,51,6e-18,seg,NULL;
ENDONUCLEASE III-RELATED,NULL; A/G-SPECIFIC ADENINE
GLYCOSYLASE/ENDONUCLEASE III,NULL,CUFF.53869.2
(1371 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G36490.1 | Symbols: DML1, ROS1 | demeter-like 1 | chr2:153082... 166 1e-40
AT5G04560.1 | Symbols: DME | HhH-GPD base excision DNA repair fa... 130 6e-30
AT5G04560.2 | Symbols: DME | HhH-GPD base excision DNA repair fa... 130 7e-30
AT3G10010.1 | Symbols: DML2 | demeter-like 2 | chr3:3081999-3088... 100 1e-20
AT4G34060.2 | Symbols: DML3 | demeter-like protein 3 | chr4:1631... 75 2e-13
AT4G34060.1 | Symbols: DML3 | demeter-like protein 3 | chr4:1631... 75 3e-13
>AT2G36490.1 | Symbols: DML1, ROS1 | demeter-like 1 |
chr2:15308259-15314272 REVERSE LENGTH=1393
Length = 1393
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/141 (65%), Positives = 108/141 (76%), Gaps = 19/141 (13%)
Query: 1245 IEALAEQFRQLNISTD--QHALVPF------------QGSFI-----KKHHPRPKVDLDE 1285
IE ++E R L+I+ + + ALVP+ G+ + KK PRPKVDLD+
Sbjct: 474 IETISELLRLLDINREHSETALVPYTMNSQIVLFGGGAGAIVPVTPVKKPRPRPKVDLDD 533
Query: 1286 ETDKVWKLLMLDINSHGVDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWK 1345
ETD+VWKLL+ +INS GVDG+DE KAKWWEEERNVFRGRADSFIARMHLVQGDRRF+ WK
Sbjct: 534 ETDRVWKLLLENINSEGVDGSDEQKAKWWEEERNVFRGRADSFIARMHLVQGDRRFTPWK 593
Query: 1346 GSVVDSVVGVFLTQNVSDHLS 1366
GSVVDSVVGVFLTQNVSDHLS
Sbjct: 594 GSVVDSVVGVFLTQNVSDHLS 614
>AT5G04560.1 | Symbols: DME | HhH-GPD base excision DNA repair family
protein | chr5:1310671-1318091 FORWARD LENGTH=1729
Length = 1729
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 80/105 (76%), Gaps = 4/105 (3%)
Query: 1263 ALVPFQGSFIKKHHPRPKVDLDEETDKVWKLLMLDINSHGVDGTDEDKAKWWEEE-RNVF 1321
ALVP++ KK PRPKVD+D+ET ++W LLM + D + K + W EE R VF
Sbjct: 683 ALVPYES---KKRKPRPKVDIDDETTRIWNLLMGKGDEKEGDEEKDKKKEKWWEEERRVF 739
Query: 1322 RGRADSFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHLS 1366
RGRADSFIARMHLVQGDRRFS WKGSVVDSV+GVFLTQNVSDHLS
Sbjct: 740 RGRADSFIARMHLVQGDRRFSPWKGSVVDSVIGVFLTQNVSDHLS 784
>AT5G04560.2 | Symbols: DME | HhH-GPD base excision DNA repair family
protein | chr5:1309786-1318091 FORWARD LENGTH=1987
Length = 1987
Score = 130 bits (327), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 80/105 (76%), Gaps = 4/105 (3%)
Query: 1263 ALVPFQGSFIKKHHPRPKVDLDEETDKVWKLLMLDINSHGVDGTDEDKAKWWEEE-RNVF 1321
ALVP++ KK PRPKVD+D+ET ++W LLM + D + K + W EE R VF
Sbjct: 941 ALVPYES---KKRKPRPKVDIDDETTRIWNLLMGKGDEKEGDEEKDKKKEKWWEEERRVF 997
Query: 1322 RGRADSFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHLS 1366
RGRADSFIARMHLVQGDRRFS WKGSVVDSV+GVFLTQNVSDHLS
Sbjct: 998 RGRADSFIARMHLVQGDRRFSPWKGSVVDSVIGVFLTQNVSDHLS 1042
>AT3G10010.1 | Symbols: DML2 | demeter-like 2 | chr3:3081999-3088195
REVERSE LENGTH=1332
Length = 1332
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/139 (54%), Positives = 100/139 (71%), Gaps = 15/139 (10%)
Query: 1243 VDIEALAEQFRQLNISTD--------QHALVPFQGSF-----IKKH--HPRPKVDLDEET 1287
+ I+A+ + F +L+I+ + + AL+ ++ S+ I K+ +PKV LD ET
Sbjct: 445 LTIDAITKLFEELDINKEGLCLPHNRETALILYKKSYEEQKAIVKYSKKQKPKVQLDPET 504
Query: 1288 DKVWKLLMLDINSHGVDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWKGS 1347
+VWKLLM I+ GVDG+DE+K KWWEEERN+F GRA+SFIARM +VQG+R FS WKGS
Sbjct: 505 SRVWKLLMSSIDCDGVDGSDEEKRKWWEEERNMFHGRANSFIARMRVVQGNRTFSPWKGS 564
Query: 1348 VVDSVVGVFLTQNVSDHLS 1366
VVDSVVGVFLTQNV+DH S
Sbjct: 565 VVDSVVGVFLTQNVADHSS 583
>AT4G34060.2 | Symbols: DML3 | demeter-like protein 3 |
chr4:16314004-16318958 FORWARD LENGTH=957
Length = 957
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 1280 KVDLDEETDKVWKLLMLDINSHGVDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDR 1339
KV+LD ET K W +LM++ + E +AKW ++ER +F+ R D FI RMH +QG+R
Sbjct: 348 KVNLDPETIKEWDVLMVNDSPSRSYDDKETEAKW-KKEREIFQTRIDLFINRMHRLQGNR 406
Query: 1340 RFSRWKGSVVDSVVGVFLTQNVSDHLS 1366
+F +WKGSVVDSVVGVFLTQN +D+LS
Sbjct: 407 KFKQWKGSVVDSVVGVFLTQNTTDYLS 433
>AT4G34060.1 | Symbols: DML3 | demeter-like protein 3 |
chr4:16314004-16319254 FORWARD LENGTH=1044
Length = 1044
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 1280 KVDLDEETDKVWKLLMLDINSHGVDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDR 1339
KV+LD ET K W +LM++ + E +AKW ++ER +F+ R D FI RMH +QG+R
Sbjct: 348 KVNLDPETIKEWDVLMVNDSPSRSYDDKETEAKW-KKEREIFQTRIDLFINRMHRLQGNR 406
Query: 1340 RFSRWKGSVVDSVVGVFLTQNVSDHLS 1366
+F +WKGSVVDSVVGVFLTQN +D+LS
Sbjct: 407 KFKQWKGSVVDSVVGVFLTQNTTDYLS 433