Miyakogusa Predicted Gene

Lj5g3v0706670.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0706670.1 tr|A9SW65|A9SW65_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_136271,46.99,0.000000000000003,Nucleopor_Nup85,
Nucleoporin Nup85-like; SUBFAMILY NOT NAMED,NULL; FROUNT
PROTEIN-RELATED,NULL,CUFF.53819.1
         (97 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32910.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nuclear po...   132   3e-32

>AT4G32910.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nuclear pore
           complex protein, Nucleoporin Nup85-like
           (InterPro:IPR011502); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:15881364-15885210 FORWARD LENGTH=716
          Length = 716

 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 76/92 (82%)

Query: 2   KQGMSLLENLLYRQSVQHNDTLLKNIEICRLYELDHISSKIMKVAGVFHWKHGPKGAGVF 61
           KQG+ LLE L YRQ VQ N  L+K++EICRLYEL ++S+K+MK++GV HWKHG KG+G+F
Sbjct: 488 KQGLGLLELLFYRQPVQENQMLIKSLEICRLYELSNVSAKLMKISGVHHWKHGRKGSGIF 547

Query: 62  WLQQAQDASCLGRIALQLFDAVGKLISDESFK 93
           WLQQA+D +CL  IA QLFD+VGK +SDES K
Sbjct: 548 WLQQARDENCLSVIAQQLFDSVGKSLSDESLK 579