Miyakogusa Predicted Gene
- Lj5g3v0659910.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0659910.2 Non Chatacterized Hit- tr|K4ALX4|K4ALX4_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica ,46.62,1e-18,RNA
recognition motif,RNA recognition motif domain; seg,NULL; no
description,Nucleotide-binding, alp,CUFF.53765.2
(152 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 118 2e-27
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 114 3e-26
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 112 9e-26
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 112 9e-26
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 112 9e-26
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 71 2e-13
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 70 6e-13
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 8e-13
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 64 3e-11
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 6e-09
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 6e-09
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 2e-07
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 2e-06
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 48 3e-06
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 3e-06
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 47 5e-06
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 47 7e-06
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 46 1e-05
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 84/124 (67%), Gaps = 7/124 (5%)
Query: 30 FCLNPNFKSISISAVFLPSTLSLSSSRFVTRVAVSSEFDQEEDTFSDDA--ETRSFAPDH 87
F LN + S SI+A + + +SRF VA++SEF+ EED F+D A + +SF+ D
Sbjct: 37 FKLNSDSVSFSIAAKW-----NSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADL 91
Query: 88 KVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTMXXXXXXXXXXXX 147
K+FVGNLPF+VDSAQLA+LF+ AGNVE+VEVIYDK+TG SRGF FVTM
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 148 FNNY 151
FN Y
Sbjct: 152 FNGY 155
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 87 HKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVT 134
++V+VGNL + VD L LF + G V VIYD+ +G S+GF FVT
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVT 251
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 81/129 (62%), Gaps = 11/129 (8%)
Query: 35 NFKSISISAVFLPSTLSLSS-----SRFVTRVAVSSEFDQEEDTF---SDDA---ETRSF 83
S + ++F S L SS SRFV VAVSS+F+ EED DD+ E SF
Sbjct: 36 KLHSDHLVSIFASSALKCSSPAEYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSF 95
Query: 84 APDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTMXXXXXXXX 143
+PD K+FVGNL F+VDSAQLA+LF+ AGNVE+VEVIYDK+TG SRGF FVTM
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Query: 144 XXXXFNNYV 152
FN YV
Sbjct: 156 AAQQFNGYV 164
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 87 HKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
++++VGNL + VD L LF + G V VIYD+ +G S+GF FVT+
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTL 326
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 112 bits (280), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 80/127 (62%), Gaps = 11/127 (8%)
Query: 36 FKSISISAVFLPSTLSLSS-----SRFVTRVAVSSEFDQEEDTF---SDDA---ETRSFA 84
S + ++F S L SS SRFV VAVSS+F+ EED DD+ E SF+
Sbjct: 37 LHSDHLVSIFASSALKCSSPAEYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFS 96
Query: 85 PDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTMXXXXXXXXX 144
PD K+FVGNL F+VDSAQLA+LF+ AGNVE+VEVIYDK+TG SRGF FVTM
Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 145 XXXFNNY 151
FN Y
Sbjct: 157 AQQFNGY 163
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 87 HKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
++++VGNL + VD L LF + G V VIYD+ +G S+GF FVT+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTL 305
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 112 bits (280), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 80/127 (62%), Gaps = 11/127 (8%)
Query: 36 FKSISISAVFLPSTLSLSS-----SRFVTRVAVSSEFDQEEDTF---SDDA---ETRSFA 84
S + ++F S L SS SRFV VAVSS+F+ EED DD+ E SF+
Sbjct: 37 LHSDHLVSIFASSALKCSSPAEYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFS 96
Query: 85 PDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTMXXXXXXXXX 144
PD K+FVGNL F+VDSAQLA+LF+ AGNVE+VEVIYDK+TG SRGF FVTM
Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 145 XXXFNNY 151
FN Y
Sbjct: 157 AQQFNGY 163
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 87 HKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
++++VGNL + VD L LF + G V VIYD+ +G S+GF FVT+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTL 305
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 112 bits (280), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 80/127 (62%), Gaps = 11/127 (8%)
Query: 36 FKSISISAVFLPSTLSLSS-----SRFVTRVAVSSEFDQEEDTF---SDDA---ETRSFA 84
S + ++F S L SS SRFV VAVSS+F+ EED DD+ E SF+
Sbjct: 37 LHSDHLVSIFASSALKCSSPAEYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFS 96
Query: 85 PDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTMXXXXXXXXX 144
PD K+FVGNL F+VDSAQLA+LF+ AGNVE+VEVIYDK+TG SRGF FVTM
Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 145 XXXFNNY 151
FN Y
Sbjct: 157 AQQFNGY 163
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 87 HKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
++++VGNL + VD L LF + G V VIYD+ +G S+GF FVT+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTL 305
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 49/87 (56%)
Query: 65 SEFDQEEDTFSDDAETRSFAPDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMT 124
SE D E S+ AE + + K+FVGNL + V+S LA LF+ AG VE+ EVIY++ T
Sbjct: 128 SEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRET 187
Query: 125 GNSRGFAFVTMXXXXXXXXXXXXFNNY 151
SRGF FVTM FN Y
Sbjct: 188 DQSRGFGFVTMSSVDEAETAVEKFNRY 214
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 81 RSFAPDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
R + P +V+VGNLP+ VD+ +L +LF + G V V+YD+ TG SRGF FVTM
Sbjct: 238 RVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTM 292
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 42/66 (63%)
Query: 86 DHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTMXXXXXXXXXX 145
+ K+FVGNLP+ VDS LA LF+ AG VE+ EVIY++ T SRGF FVTM
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 146 XXFNNY 151
FN++
Sbjct: 172 EKFNSF 177
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 77 DAETRSFAPDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
+ + R + +++VGNLP+ VDS +L LF + G V V+ D+ TG SRGF FV M
Sbjct: 197 ERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQM 255
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 52/77 (67%), Gaps = 7/77 (9%)
Query: 63 VSSEFDQEEDTFSDDAETRSFAP----DHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEV 118
++ + ++EE DD + P + K++ GNLP++VDSA LA++ QD N E+VEV
Sbjct: 60 ITVKLEEEE---KDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEV 116
Query: 119 IYDKMTGNSRGFAFVTM 135
+Y++ TG SRGFAFVTM
Sbjct: 117 LYNRDTGQSRGFAFVTM 133
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 86 DHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVT 134
+HK+FVGNL ++V S LA F++ G+V V++D TG SRG+ FV
Sbjct: 176 EHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVC 224
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 46/70 (65%)
Query: 80 TRSFAPDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTMXXXX 139
T++ + +++VGNLP+++ S++L+++F +AG V V+++YDK+T SRGF FVTM
Sbjct: 109 TQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIE 168
Query: 140 XXXXXXXXFN 149
FN
Sbjct: 169 EAKEAMQMFN 178
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 87 HKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
+V++GN+P +V + QL +L ++ G VE V+V+YDK +G SR F F TM
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATM 124
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 87 HKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
+V++GN+P +V + QL +L ++ G VE V+V+YDK +G SR F F TM
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATM 124
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 66 EFDQEEDTFSDDAETRSFAPDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTG 125
E QEE T ET++ K+FV NLP+S+ ++ELF G V VE+I K G
Sbjct: 78 ETSQEEKT----EETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DG 132
Query: 126 NSRGFAFVTM 135
+RGFAFVTM
Sbjct: 133 KNRGFAFVTM 142
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 88 KVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFV 133
K+F+G L +SVD L + F G V V + YDK +G SRGF FV
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFV 87
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 88 KVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVT 134
K+FVG + +S D L E F G V ++I D+ TG SRGFAFVT
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVT 81
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 88 KVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVT 134
K+FVG +P SVD + E F G ++ +++ D TG SRGF FVT
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVT 177
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 86 DHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFV 133
D K++VGNL F++ QL ++F+ G VE+V++ D TG +GF F+
Sbjct: 264 DRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFI 311
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 88 KVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVT 134
K+F+G + +S+D L E F G V VI D+ TG SRGF FVT
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 71 EDTFSDDAETRSFAPDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGF 130
+D+ AE +++V N+P S D AQL ++FQ G V VEV + TG SRG
Sbjct: 92 KDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGS 151
Query: 131 AFVTM 135
+VTM
Sbjct: 152 GYVTM 156