Miyakogusa Predicted Gene

Lj5g3v0659640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0659640.1 Non Chatacterized Hit- tr|B9RDU6|B9RDU6_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,48.45,9e-18,ARID/BRIGHT DNA binding domain,NULL; BRIGHT, ARID
(A/T-rich interaction domain) d,ARID/BRIGHT DNA-bi,CUFF.53655.1
         (175 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11400.1 | Symbols:  | ARID/BRIGHT DNA-binding domain;ELM2 do...    52   2e-07
AT2G46040.1 | Symbols:  | ARID/BRIGHT DNA-binding domain;ELM2 do...    51   4e-07

>AT4G11400.1 | Symbols:  | ARID/BRIGHT DNA-binding domain;ELM2
           domain protein | chr4:6938717-6940539 FORWARD LENGTH=573
          Length = 573

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 59  KKVDLCKLFLVVKGKGGYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWME 118
           K VDL KLF++V+ + G+D V  ++LW +  E+ G   S+  ++ L YLKYL+ ++ W  
Sbjct: 55  KNVDLFKLFVLVREREGFDTVSRKRLWEVVAEKLGFDCSLVPSLILIYLKYLNRMEKWA- 113

Query: 119 KNVDRKEVINLECK 132
             V+   ++N + K
Sbjct: 114 --VEESRIVNWDNK 125


>AT2G46040.1 | Symbols:  | ARID/BRIGHT DNA-binding domain;ELM2
           domain protein | chr2:18935684-18937807 REVERSE
           LENGTH=562
          Length = 562

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 35/63 (55%)

Query: 59  KKVDLCKLFLVVKGKGGYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWME 118
           + VDL  LFL V  KGG+DAV     W+   +ESG      ++ KL Y+KYL A   W+ 
Sbjct: 77  RTVDLFNLFLNVTHKGGFDAVSENGSWDEVVQESGLESYDSASAKLIYVKYLDAFGRWLN 136

Query: 119 KNV 121
           + V
Sbjct: 137 RVV 139