Miyakogusa Predicted Gene

Lj5g3v0659340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0659340.1 Non Chatacterized Hit- tr|I1LZ84|I1LZ84_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.37816 PE,72.2,0,Sigma2
domain of RNA polymerase sigma factors,RNA polymerase sigma factor,
region 2; Sigma3 and sigm,CUFF.53640.1
         (569 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymera...   485   e-137
AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATS...   256   2e-68
AT5G13730.1 | Symbols: SIG4, SIGD | sigma factor 4 | chr5:442913...   167   2e-41
AT3G53920.1 | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit ...   164   1e-40
AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma fac...   139   6e-33
AT1G64860.2 | Symbols: SIGA | sigma factor A | chr1:24098497-241...   123   3e-28
AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E | chr...   122   7e-28

>AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymerase
           sigma-subunit F | chr2:15537502-15540016 REVERSE
           LENGTH=547
          Length = 547

 Score =  485 bits (1248), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/570 (47%), Positives = 356/570 (62%), Gaps = 24/570 (4%)

Query: 1   MESARTIFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSVL 60
           ME+ R +  +SP F  +TH   +  SS  + V++  +   P V+SR  +  ++ FP SVL
Sbjct: 1   MEATRNLVSSSPSFQTKTH-LKSSYSSPSSVVMLHDQTTTPVVNSRHLNSLSRHFPASVL 59

Query: 61  LQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVHEENNIGKVDQVVDDFRQHLHLWPH 120
            QE R+E RPL H  ++D+T Q  L  RQ D  +   E+         + F Q L     
Sbjct: 60  SQEPREESRPLSHALRDDRTSQLTLERRQFDELVSSRED---------EKFEQQLLHSTG 110

Query: 121 LQNLLTSSETGEVDASSTLQHVTVAERPANDVPCNAISLSRQALSPSKHEASVXXXXXXX 180
           L NLL S  T E    + +  +  AE       C+ ++L+++ALS SK  A +       
Sbjct: 111 LWNLLISPLTSETKLPAVVSPLADAEL------CDVVALAQKALSASKQAALLVDDTEAN 164

Query: 181 XXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQE 240
                              + N  VRS R LE              D++ Y+ +K     
Sbjct: 165 PSDNIKDSLSTSSSMSLPEKGN-IVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTS--- 220

Query: 241 RIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQF 299
               K+K  +  D +D  +LFL  P  K+LL  +EE++LI  IQ LLKLE++KT L+SQ 
Sbjct: 221 ---AKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQN 277

Query: 300 GREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLL 359
           G EPT+ EWAE  G+    L+  +  G  SREKLI ANLR+V+H+AK YQ RGL+ QDLL
Sbjct: 278 GCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLL 337

Query: 360 QEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILE 419
           QEGSMGL+KSV+KFKPQ GCRF +YAYWWI+Q+IRK+IF +SRTIRLPE VY  LGK+ E
Sbjct: 338 QEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSE 397

Query: 420 AKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITAD 479
           A+K  +QEGN RP+KE+LA  VG+S +K+  LLY  R P+SMQQ +W+DQ+TTFQEIT D
Sbjct: 398 ARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPD 457

Query: 480 TSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKE 539
           + IE+P  SV K+LMR HV NLL+ L PKERRII+LRFG + G+Q+SLSE+GEI+GLSKE
Sbjct: 458 SGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKE 517

Query: 540 RVRQLENRAFYKLKKCLASQGLDAYADLLV 569
           RVRQLE+RA Y+LK+ + S GL AYADLLV
Sbjct: 518 RVRQLESRALYRLKQNMNSHGLHAYADLLV 547


>AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2
           | RNApolymerase sigma subunit 2 | chr1:2703461-2706696
           FORWARD LENGTH=572
          Length = 572

 Score =  256 bits (655), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 198/310 (63%), Gaps = 1/310 (0%)

Query: 245 KRKINEAFDQNDPQR-LFLRSPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREP 303
           KR + +  D NDP R L + +   KLL + EE +L   IQDLLKLE L+T L  + GR+P
Sbjct: 247 KRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQP 306

Query: 304 TMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGS 363
           T A+WA  AG+  ++L+ ++  G   ++K+IK+N+R+V+ +AK YQG G++LQDL+QEG 
Sbjct: 307 TFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGC 366

Query: 364 MGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKL 423
            GL++  +KF    G +F +YA+WWIKQA+RK++   SR IRLP  +     ++ EA+K 
Sbjct: 367 RGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQ 426

Query: 424 YIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIE 483
              E    P  E++A   G+S  ++ ++L   + P S+ Q +  +QN    E+ AD    
Sbjct: 427 LYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAV 486

Query: 484 SPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQ 543
           + +  + KE MR+ +  +L +L  +E+++IR RFG EDG  K+L E+GE+ G+S+ERVRQ
Sbjct: 487 TSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQ 546

Query: 544 LENRAFYKLK 553
           +E+ AF KLK
Sbjct: 547 IESSAFRKLK 556


>AT5G13730.1 | Symbols: SIG4, SIGD | sigma factor 4 |
           chr5:4429132-4430744 REVERSE LENGTH=419
          Length = 419

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/291 (33%), Positives = 156/291 (53%), Gaps = 3/291 (1%)

Query: 274 EESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKL 333
           EE QL + +++  KLE L TS++     E      A G G K R+    L     +REK+
Sbjct: 127 EEVQLCLYLKEGAKLENLGTSVEEN---EMVSVLLASGRGKKKRSANEILCRRKEAREKI 183

Query: 334 IKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAI 393
            +   R+V+ +A  YQG+GL+LQDL+QEGS+GLL+  ++F P  G +  +Y YWWIKQAI
Sbjct: 184 TRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAI 243

Query: 394 RKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLY 453
            +AI H SR ++LP  ++    K+ EA  +  ++   +P+ E++A  + ++   +   + 
Sbjct: 244 LRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVE 303

Query: 454 VARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRII 513
            +R P+S+ +    +   T QEI        P+  V +E M+  +  LL +L  +E R++
Sbjct: 304 RSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVL 363

Query: 514 RLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDAY 564
            L FG       S  E+G+   LS+ERVRQ+   A  KL+       L  Y
Sbjct: 364 GLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414


>AT3G53920.1 | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit C |
           chr3:19961041-19963820 REVERSE LENGTH=571
          Length = 571

 Score =  164 bits (415), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 169/293 (57%), Gaps = 1/293 (0%)

Query: 275 ESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLI 334
           E+++   ++ +  +E ++T L+ + G+  +++ WA  AG+  + L   L  G   R++L+
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337

Query: 335 KANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIR 394
           K+   +VL +A+ Y+G G++ +DL+Q G +G+L+  ++F    G +F +Y  +WI++++ 
Sbjct: 338 KSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMS 397

Query: 395 KAIFHHSRTIRLPEKVYTQLGKILEAKK-LYIQEGNLRPTKEDLARRVGISEDKISSLLY 453
             +  H+R + +P  +   +  I +A+K L    G      E++A+  G S  KI +   
Sbjct: 398 TMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQ 457

Query: 454 VARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRII 513
             ++  S+ + V     T F E T DT++ESP+ +V ++  RR + +LL  L P+E++++
Sbjct: 458 CLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVM 517

Query: 514 RLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDAYAD 566
            LR+G +D   KSL E+G++  +SKE +R++E RA  KL+    ++ L  Y +
Sbjct: 518 VLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570


>AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma factor
           A | chr1:24098497-24100746 FORWARD LENGTH=502
          Length = 502

 Score =  139 bits (350), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 157/289 (54%), Gaps = 8/289 (2%)

Query: 281 QIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRM 340
           +I+  L+L++ K+ L+ + G EP+  + A    +    LQ  L   + +REKL  +N+R+
Sbjct: 211 KIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRL 270

Query: 341 VLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHH 400
           V+ +A+ Y   G  + DL+Q G +GLL+ ++KF    G R  +Y YWWI+Q + +A+  +
Sbjct: 271 VMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDN 330

Query: 401 SRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMS 460
           SRT+RLP  ++ +LG I  A KL +QE  + P+ + +A  + +S+ K+ +         S
Sbjct: 331 SRTLRLPTHLHERLGLIRNA-KLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFS 389

Query: 461 MQQTVWTDQNT----TFQEITADTSIE-SPDSSVSKELMRRHVLNLLS-TLRPKERRIIR 514
           + +  +   N     T     ADT +E +P        ++  V  L+S TL  +E+ IIR
Sbjct: 390 LDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIR 449

Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDA 563
           L +G  D E  +  ++ +  GLS+ERVRQ+   A  KLK     + ++A
Sbjct: 450 LYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEA 497


>AT1G64860.2 | Symbols: SIGA | sigma factor A |
           chr1:24098497-24100739 FORWARD LENGTH=498
          Length = 498

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 134/246 (54%), Gaps = 7/246 (2%)

Query: 281 QIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRM 340
           +I+  L+L++ K+ L+ + G EP+  + A    +    LQ  L   + +REKL  +N+R+
Sbjct: 211 KIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRL 270

Query: 341 VLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHH 400
           V+ +A+ Y   G  + DL+Q G +GLL+ ++KF    G R  +Y YWWI+Q + +A+  +
Sbjct: 271 VMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDN 330

Query: 401 SRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMS 460
           SRT+RLP  ++ +LG I  A KL +QE  + P+ + +A  + +S+ K+ +         S
Sbjct: 331 SRTLRLPTHLHERLGLIRNA-KLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFS 389

Query: 461 MQQTVWTDQNT----TFQEITADTSIE-SPDSSVSKELMRRHVLNLLS-TLRPKERRIIR 514
           + +  +   N     T     ADT +E +P        ++  V  L+S TL  +E+ IIR
Sbjct: 390 LDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIR 449

Query: 515 LRFGFE 520
           L +G +
Sbjct: 450 LYYGLD 455


>AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E |
           chr5:8157794-8159746 REVERSE LENGTH=517
          Length = 517

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 148/284 (52%), Gaps = 7/284 (2%)

Query: 274 EESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKL 333
           E + L   +Q +  L E+K  LQ   GREP  AE A    +    ++ K+  G  +R KL
Sbjct: 224 EHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKL 283

Query: 334 IKANLRMVLHVAKTY---QGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIK 390
           IK NLR+VL V   Y      G   QDL Q G  GL+ ++ +F+P+   R  +Y  +WI+
Sbjct: 284 IKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIR 343

Query: 391 QAIRKAIFHHSRTIRLPEKVYTQLGKILEAK-KLYIQEGNLRPTKEDLARRVGISEDKIS 449
            AI +++   + T R+P  + +   +I +AK +L+ + G   PT++++  R+ I+ ++  
Sbjct: 344 HAIIRSMTTSNFT-RVPFGLESVRVEIYKAKTELWFEMGR-PPTEDEVVERLKITPERYR 401

Query: 450 SLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLSTLRPKE 509
            +L  A+  +S+       Q      IT D      ++S    L+R  + ++L +L+PKE
Sbjct: 402 EVLRAAKPVLSLNSKHSVTQEEFINGIT-DVDGVGANNSRQPALLRLALDDVLDSLKPKE 460

Query: 510 RRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
             +IR R+G +    ++L E+     +S+E VR+ E +A  KLK
Sbjct: 461 SLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLK 504