Miyakogusa Predicted Gene

Lj5g3v0658310.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0658310.1 CUFF.53651.1
         (355 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34340.1 | Symbols: TAF8 | TBP-associated factor 8 | chr4:164...   221   8e-58
AT3G02160.1 | Symbols:  | Bromodomain transcription factor | chr...   118   5e-27
AT5G15570.1 | Symbols:  | Bromodomain transcription factor | chr...   111   9e-25
AT1G31240.1 | Symbols:  | Bromodomain transcription factor | chr...    73   3e-13

>AT4G34340.1 | Symbols: TAF8 | TBP-associated factor 8 |
           chr4:16426771-16427832 REVERSE LENGTH=353
          Length = 353

 Score =  221 bits (562), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 138/338 (40%), Positives = 179/338 (52%), Gaps = 42/338 (12%)

Query: 39  QLCESQGFHAVRTSALDSLADVAIRYLVDLGKIAELYANLSGRSHCSVFDLIRGFEDLEA 98
           Q+CES G+   +  AL+SL+  A++Y++ LGK A  +ANL+GRS C+VFD+I   +DL  
Sbjct: 37  QVCESVGYENFKDPALESLSGFALQYILQLGKTATSFANLTGRSQCNVFDIILALDDLTD 96

Query: 99  PRGFSG----------GAGLKEIVNYVEAVDEVPFAQPIPQFPVI---RERRSIPSFDQM 145
             G  G             L+EI+++V + +EVPF+QP+P FPV    R R+ IPSF ++
Sbjct: 97  NNGEQGISSESCSLGRSIKLREIIDFVNSSEEVPFSQPLPSFPVAISDRSRKMIPSFVEI 156

Query: 146 GETPPGKHIPAWLPALPDPHTYIHTPVWDERVSDPREDKIEQARQRRKAEXXXXXXXXXX 205
           GETPPGKHIP WLPA PDPHTY  TP+W ERVSDPR DKIEQARQRRKAE          
Sbjct: 157 GETPPGKHIPLWLPAFPDPHTYKETPMWIERVSDPRGDKIEQARQRRKAE-RALLSLQRK 215

Query: 206 XXCNGSAEXXXXXXXXXXXXXXPTGVAMDPGRADKDVSPVKIPAVSDGSRV--------S 257
             C  S+               P    MD  + +      ++ +VS G +V        S
Sbjct: 216 LVCKISSR-------------NPVWGDMDGVKEEMRDDESELRSVSSGEKVESLNRDGLS 262

Query: 258 VLEAFAPAIEVLGSSSLCDDDGVEGRMVVPAARPTVHFKFRTGKKLIGESLDARLQKKDA 317
           V+EAFAPA+E        D    E        +P    K RT KK +G+ LD  LQ K  
Sbjct: 263 VIEAFAPAMEAAR-----DGFSSEAHTEWKKNKPVALSKLRTEKKFLGQPLDLSLQMK-G 316

Query: 318 ASRAASLGGXXXXXXXXXXXAEYILRQSIENPQELTLL 355
             R  S              AE+ILRQ +ENP +L  L
Sbjct: 317 EDRPISF-VREEDRDDKRRRAEFILRQCMENPVDLNQL 353


>AT3G02160.1 | Symbols:  | Bromodomain transcription factor |
           chr3:394615-395808 FORWARD LENGTH=397
          Length = 397

 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 24/157 (15%)

Query: 31  TAAKVAVSQLCES------------QG--FHAVRTSALDSLADVAIRYLVDLGKIAELYA 76
           + A++AV+Q+CES            +G  F + + SALD+L DVA++Y+  +GK A LYA
Sbjct: 46  SIARMAVAQICESVEVNPYQESQTREGVRFSSFQESALDTLTDVAVQYIQSIGKTAHLYA 105

Query: 77  NLSGRSHCSVFDLIRGFEDLEAPRGFSG----------GAGLKEIVNYVEAVDEVPFAQP 126
           NL+GR   +  D+++  EDL +  GF+G             +K+I+ Y    +E+PF   
Sbjct: 106 NLAGRVDGNSLDILQALEDLGSGLGFAGVSDTDHCLADSGVVKDIIRYTGEAEEIPFVYS 165

Query: 127 IPQFPVIRERRSIPSFDQMGETPPGKHIPAWLPALPD 163
           +P+FP  +E++  PSF ++G  PP +HIP WLPA P+
Sbjct: 166 LPRFPFSKEKKPAPSFSEVGAEPPDEHIPVWLPAFPE 202


>AT5G15570.1 | Symbols:  | Bromodomain transcription factor |
           chr5:5066851-5067996 FORWARD LENGTH=381
          Length = 381

 Score =  111 bits (277), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 25/156 (16%)

Query: 33  AKVAVSQLCES-------------QG--FHAVRTSALDSLADVAIRYLVDLGKIAELYAN 77
           A++A +Q+CES             +G  F + + +AL++L DV I+Y+ ++GK A+ Y N
Sbjct: 32  ARMATAQICESVEINSYQESSQSREGLRFSSFQETALETLTDVVIQYIQNIGKTAQFYVN 91

Query: 78  LSGRSHCSVFDLIRGFEDLEAPRGFSGGAGL----------KEIVNYVEAVDEVPFAQPI 127
           ++GR   +  D+++  EDL +  GF G   +          K+I+ Y    +E+PF   +
Sbjct: 92  MAGRVESNALDIVQALEDLGSGLGFDGAHDVEHCLADSGVVKDIIRYTGEAEEIPFVYSL 151

Query: 128 PQFPVIRERRSIPSFDQMGETPPGKHIPAWLPALPD 163
           P+FP  R +R  PSF  +G  PP +HIP WLPA P+
Sbjct: 152 PRFPFNRGKRPAPSFSDIGVEPPDEHIPVWLPAFPE 187


>AT1G31240.1 | Symbols:  | Bromodomain transcription factor |
           chr1:11164065-11164898 REVERSE LENGTH=277
          Length = 277

 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 24/151 (15%)

Query: 33  AKVAVSQLCESQGFHAVRTSALDSLADVAIRYLVDLGKIAELYANLSGRSHCSVFDLIRG 92
            K+AVSQ+C+S G+ A   SAL++L     ++L  L ++A  ++N + R+  ++FD++ G
Sbjct: 31  TKIAVSQICQSIGYKATDASALNTLTLTTTKFLQSLAELASSFSNTANRTEVNLFDIVNG 90

Query: 93  FED--LEAPRGFSGG--------------AGLKEIVNYVEAVDEVPFAQPIPQFPVIRER 136
            +D  L     F GG              A L+ + ++V    E+PFA+P+P+    RER
Sbjct: 91  LQDIALSTSDCFPGGSTVHDIESQCLIKSAVLRNLSDFVTYAPEIPFAKPLPR----RER 146

Query: 137 RSIPSFD----QMGETPPGKHIPAWLPALPD 163
                 D     +  +     +PAWLP  PD
Sbjct: 147 DGSFGGDLDHVAVTRSVDVTSVPAWLPPFPD 177