Miyakogusa Predicted Gene

Lj5g3v0641390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0641390.1 Non Chatacterized Hit- tr|G6FW75|G6FW75_9CYAN
Putative uncharacterized protein OS=Fischerella sp.
JS,47.9,1e-17,seg,NULL; DUF4079,Protein of unknown function
DUF4079,CUFF.53594.1
         (118 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36885.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   171   9e-44
AT2G36885.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   167   1e-42

>AT2G36885.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 172 Blast hits to 172 proteins in 58
           species: Archae - 0; Bacteria - 116; Metazoa - 0; Fungi
           - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 24
           (source: NCBI BLink). | chr2:15482167-15483676 REVERSE
           LENGTH=256
          Length = 256

 Score =  171 bits (433), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 92/117 (78%)

Query: 1   MGGYGTYLGFRIRYSDDVEEKAKAKDLHPKXXXXXXXXXXXXXXXXVTSLLTSDKPIFES 60
           MGGYGTYLGFRIRYSDD+EEKAKAKDLHPK                V SLLTSDKPIFES
Sbjct: 139 MGGYGTYLGFRIRYSDDIEEKAKAKDLHPKLLAGMFFFFALGATGGVISLLTSDKPIFES 198

Query: 61  PHAVTGAIGLALLTVQTILPTLFEGNPGLRSVHGILGSSIMTLFLIHAALGLQLGLS 117
           PHAVTG IGL LLTVQTILP+LF+  P LR+VHGILGS IM LFL+HAA GLQLGLS
Sbjct: 199 PHAVTGLIGLGLLTVQTILPSLFKEKPELRNVHGILGSGIMALFLVHAAFGLQLGLS 255


>AT2G36885.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 35333 Blast hits to 34131 proteins in
           2444 species: Archae - 798; Bacteria - 22429; Metazoa -
           974; Fungi - 991; Plants - 531; Viruses - 0; Other
           Eukaryotes - 9610 (source: NCBI BLink). |
           chr2:15482167-15483676 REVERSE LENGTH=255
          Length = 255

 Score =  167 bits (423), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 92/117 (78%), Gaps = 1/117 (0%)

Query: 1   MGGYGTYLGFRIRYSDDVEEKAKAKDLHPKXXXXXXXXXXXXXXXXVTSLLTSDKPIFES 60
           MGGYGTYLGFRIRYSDD+EEKAKAKDLHPK                V SLLTSDKPIFES
Sbjct: 139 MGGYGTYLGFRIRYSDDIEEKAKAKDLHPKLLAGMFFFFALGATGGVISLLTSDKPIFES 198

Query: 61  PHAVTGAIGLALLTVQTILPTLFEGNPGLRSVHGILGSSIMTLFLIHAALGLQLGLS 117
           PHAVTG IGL LLTVQTILP+LF+  P LR+VHGILGS IM LFL+HAA GLQLGLS
Sbjct: 199 PHAVTGLIGLGLLTVQTILPSLFK-KPELRNVHGILGSGIMALFLVHAAFGLQLGLS 254