Miyakogusa Predicted Gene

Lj5g3v0626530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0626530.1 Non Chatacterized Hit- tr|I3SF84|I3SF84_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,97.73,3.99931e-42,no description,NULL; Sm-like
ribonucleoproteins,Like-Sm (LSM) domain; LSM,Ribonucleoprotein LSM
doma,CUFF.53550.1
         (88 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30330.1 | Symbols:  | Small nuclear ribonucleoprotein family...   166   2e-42
AT2G18740.1 | Symbols:  | Small nuclear ribonucleoprotein family...   166   3e-42
AT2G18740.2 | Symbols:  | Small nuclear ribonucleoprotein family...   134   1e-32
AT5G48870.1 | Symbols: SAD1 | Small nuclear ribonucleoprotein fa...    47   2e-06

>AT4G30330.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr4:14836773-14837919 REVERSE LENGTH=88
          Length = 88

 Score =  166 bits (421), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/88 (90%), Positives = 85/88 (96%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88
          ++KKK+RK LGRILLKGDNITLMMN GK
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNAGK 88


>AT2G18740.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:8123334-8124710 FORWARD LENGTH=88
          Length = 88

 Score =  166 bits (420), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/88 (90%), Positives = 85/88 (96%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88
          ++KK +RK LGRILLKGDNITLMMNTGK
Sbjct: 61 SIKKNTRKPLGRILLKGDNITLMMNTGK 88


>AT2G18740.2 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:8123334-8124581 FORWARD LENGTH=78
          Length = 78

 Score =  134 bits (337), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/71 (88%), Positives = 68/71 (95%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSRKTLG 71
          ++KK +RK LG
Sbjct: 61 SIKKNTRKPLG 71


>AT5G48870.1 | Symbols: SAD1 | Small nuclear ribonucleoprotein
          family protein | chr5:19813407-19814362 FORWARD
          LENGTH=88
          Length = 88

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--L 70
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + R+   L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65

Query: 71 GRILLKGDNITLMMNTGK 88
           +ILL G+NI +++  G 
Sbjct: 66 DQILLNGNNIAILVPGGS 83