Miyakogusa Predicted Gene

Lj5g3v0616260.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0616260.1 Non Chatacterized Hit- tr|H3JN27|H3JN27_STRPU
Uncharacterized protein OS=Strongylocentrotus
purpurat,26.86,2e-16,Atx10homo_assoc,Ataxin-10 domain; no
description,Armadillo-like helical; ARM repeat,Armadillo-type
f,CUFF.53541.1
         (480 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00231.1 | Symbols: MEE50 | ARM repeat superfamily protein | ...   398   e-111

>AT4G00231.1 | Symbols: MEE50 | ARM repeat superfamily protein |
           chr4:97528-99050 FORWARD LENGTH=475
          Length = 475

 Score =  398 bits (1023), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/446 (47%), Positives = 296/446 (66%), Gaps = 22/446 (4%)

Query: 40  SRSDYGRSDLASRKVLPAVLSIVQSLTQ-TRHHVLSLCFKLFRNLCAGEAANQNLFLELG 98
           S++D GRSDLAS+ +LP++L ++Q L   +  H L+L  K+ RNLCAGE +NQN F++  
Sbjct: 34  SKTDSGRSDLASKSILPSILRLLQLLPYPSSRHYLNLSLKVLRNLCAGEVSNQNSFVDHD 93

Query: 99  GVAVVSGILRSQAGSPCPDHGLVRWGLQVLANVSLAGKQHQRAIWEELYPVGFGSLARLG 158
           G A+VS +L S       D   VR+GLQVLANV L G++ QR +W   YP  F S+A++ 
Sbjct: 94  GSAIVSDLLDSAIA----DFETVRFGLQVLANVVLFGEKRQRDVWLRFYPERFLSIAKIR 149

Query: 159 TKQTCDPLCMLIYTCCDGNPEWFRELSNANGWHIMAQILRTASSASFDED-WIKLLISRI 217
            ++T DPLCM++YTC DG+ E   EL +  G  I+A+ LRT+SS    ED W+KLL+SRI
Sbjct: 150 KRETFDPLCMILYTCVDGSSEIASELCSCQGLTIIAETLRTSSSVGSVEDYWLKLLVSRI 209

Query: 218 CLEECLLPVLFSELRFVDAPKDEDTESNEKEFSSEQAFLLRILPEILNERIRDVTVSEDV 277
           C+E+     LFS+L        ED E+  + FSSEQAFL+R++ +I NERI  V++ +D 
Sbjct: 210 CVEDGYFLKLFSKLY-------EDAEN--EIFSSEQAFLVRMVSDIANERIGKVSIPKDT 260

Query: 278 ALFVFGIFKKSLGVLEHATRSKFGLPSGSAAVDVLGYTLTILRDICA----EDSVRGNNG 333
           A  + G+F++S+ V +  +  +  LP+GS  VDV+GY+L I+RD CA    E+    N  
Sbjct: 261 ACSILGLFRQSVDVFDFVSGERSELPTGSTIVDVMGYSLVIIRDACAGGRLEELKEDNKD 320

Query: 334 KEDIVDVXXXXXXXXXXXXXXXXXXPPAIIRKGIKQFENQDGASCSSKPCPYKGFRRDIV 393
             D V++                  PP  I+K + Q  +   +S   KPCPY+GFRRDIV
Sbjct: 321 SGDTVELLLSSGLIELLLDLLSKLDPPTTIKKALNQSPSSSSSSL--KPCPYRGFRRDIV 378

Query: 394 ALIGNCLYRRKHVQDEIRQRNGILLLLQQCVTDEDNPFLREWGIWSVRNMLEGNEENQKL 453
           ++IGNC YRRK VQDEIR+R+G+ L+LQQCVTD++NPFLREWG+W +RN+LEGN ENQ++
Sbjct: 379 SVIGNCAYRRKEVQDEIRERDGLFLMLQQCVTDDENPFLREWGLWCIRNLLEGNPENQEV 438

Query: 454 VAELEFQGSADALPEIAALGLRVEVD 479
           VAELE +GS D +P++  +GLRVE+D
Sbjct: 439 VAELEIKGSVD-VPQLREIGLRVEID 463