Miyakogusa Predicted Gene

Lj5g3v0616120.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0616120.4 Non Chatacterized Hit- tr|I1L8R3|I1L8R3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.45028
PE,73.38,0,RRM_5,NULL; RNA recognition motif,RNA recognition motif
domain, eukaryote; RNA recognition motif,RNA,CUFF.53517.4
         (529 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G45630.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...   416   e-116
AT5G60170.2 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...   408   e-114
AT5G60170.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...   399   e-111
AT2G28540.2 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...   388   e-108
AT2G28540.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...   388   e-108
AT3G48070.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    67   4e-11
AT5G62910.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    66   5e-11
AT3G48070.2 | Symbols:  | RING/U-box superfamily protein | chr3:...    66   5e-11
AT1G74870.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    66   6e-11

>AT3G45630.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr3:16748751-16753190 REVERSE LENGTH=989
          Length = 989

 Score =  416 bits (1070), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/353 (58%), Positives = 248/353 (70%), Gaps = 20/353 (5%)

Query: 3   MGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPY 62
           M D GEK+CP+C EEMDLTDQQLKPCKCGY+ICVWCWHHIM+MA+K++SEGRCPACR+PY
Sbjct: 1   MSDYGEKTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIMDMAEKDQSEGRCPACRTPY 60

Query: 63  DKDRITSMAANCRRLVAEMNXXXXXXXXXXXXXXXDGRKHLNDVRVIQRHLVYIIGLPLN 122
           DK++I  M  +  RL +E N               DGRK L  VRV+QR+LVYI+GLPLN
Sbjct: 61  DKEKIVGMTVDQERLASEGNMDRKKIQKSKPKSS-DGRKPLTSVRVVQRNLVYIVGLPLN 119

Query: 123 LADEDLLQRREYFGRYGKVMKVSISRTATGLFQHSANNTCCVYISYSKESEAVRCIQSVH 182
           LADEDLLQR+EYFG+YGKV+KVS+SRTATGL Q   NNTC VYI+Y KE EA+RCIQSVH
Sbjct: 120 LADEDLLQRKEYFGQYGKVLKVSMSRTATGLIQQFPNNTCSVYITYGKEEEAIRCIQSVH 179

Query: 183 CFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARSRV 242
            F+L+G+ L+ACFGTTKYCHAWLRNV CNN++CLYLH+ GS EDSFTKDE++   A +RV
Sbjct: 180 GFILDGKALKACFGTTKYCHAWLRNVACNNQDCLYLHEVGSQEDSFTKDEII--SAHTRV 237

Query: 243 LQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDN---QIKGSCSGTGAANLT 299
            QI GATN +  RSGS+LPPP+D     SS    ++K PS       K S     +   T
Sbjct: 238 QQITGATNTMQYRSGSMLPPPLDAYTSDSSTGNPIAKVPSSTSVSAPKSSPPSGSSGKST 297

Query: 300 ALPAVTSW-ARCV-----------SGSLRQDSTSSRSNNLANRKV--EASNDP 338
           ALPA  SW AR             +GSL    ++S +  LA   V  +A+N P
Sbjct: 298 ALPAAASWGARLTNQHSLATSALSNGSLDNQRSTSENGTLATSTVVTKAANGP 350


>AT5G60170.2 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr5:24228178-24232394 FORWARD LENGTH=987
          Length = 987

 Score =  408 bits (1048), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 186/311 (59%), Positives = 228/311 (73%), Gaps = 5/311 (1%)

Query: 3   MGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPY 62
           M D GEK+CP+C EEMDLTDQQLKPCKCGY+ICVWCWHHI++MA+K++ EGRCPACR+PY
Sbjct: 1   MSDHGEKTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIVDMAEKDQIEGRCPACRTPY 60

Query: 63  DKDRITSMAANCRRLVAEMNXXXXXXXXXXXXXXXDGRKHLNDVRVIQRHLVYIIGLPLN 122
           DK++I  M  NC  L +E N                 ++ L  VRVIQR+LVYI+GLPLN
Sbjct: 61  DKEKIVGMTVNCDSLASEGNMERKKIQKSKSKSSEGRKQQLTSVRVIQRNLVYIVGLPLN 120

Query: 123 LADEDLLQRREYFGRYGKVMKVSISRTATGLFQHSANNTCCVYISYSKESEAVRCIQSVH 182
           LADEDLLQ +EYFG+YGKV+KVS+SRTA+G+ Q   NNTC VYI+Y KE EAVRCIQ+VH
Sbjct: 121 LADEDLLQHKEYFGQYGKVLKVSMSRTASGVIQQFPNNTCSVYITYGKEEEAVRCIQAVH 180

Query: 183 CFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARSRV 242
            F+L+G+PL+ACFGTTKYCHAWLRNV C N +CLYLH+ GS +DSFTKDE++ A+ RSRV
Sbjct: 181 GFILDGKPLKACFGTTKYCHAWLRNVACVNPDCLYLHEVGSQDDSFTKDEIISAYTRSRV 240

Query: 243 LQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDN-----QIKGSCSGTGAAN 297
            QI GATN L   SG++LPPP+D     SS+ K + K PS N     +         ++ 
Sbjct: 241 QQITGATNILQHHSGNMLPPPLDAYCSDSSSAKPIIKVPSTNATSVPRYSPPSGSGSSSR 300

Query: 298 LTALPAVTSWA 308
            TALPA  SW 
Sbjct: 301 STALPAAASWG 311


>AT5G60170.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr5:24228178-24232394 FORWARD LENGTH=985
          Length = 985

 Score =  399 bits (1026), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 184/311 (59%), Positives = 227/311 (72%), Gaps = 7/311 (2%)

Query: 3   MGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPY 62
           M D GEK+CP+C EEMDLTDQQLKPCKCGY+ICVWCWHHI++MA+K++ EGRCPACR+PY
Sbjct: 1   MSDHGEKTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIVDMAEKDQIEGRCPACRTPY 60

Query: 63  DKDRITSMAANCRRLVAEMNXXXXXXXXXXXXXXXDGRKHLNDVRVIQRHLVYIIGLPLN 122
           DK++I  M  NC  L +E N                 ++ L  VRVIQR+LVYI+GLPLN
Sbjct: 61  DKEKIVGMTVNCDSLASEGNMERKKIQKSKSKSSEGRKQQLTSVRVIQRNLVYIVGLPLN 120

Query: 123 LADEDLLQRREYFGRYGKVMKVSISRTATGLFQHSANNTCCVYISYSKESEAVRCIQSVH 182
           LADEDLLQ +EYFG+YGKV+KVS+SRTA+G+ Q   NNTC VYI+Y KE EAVRCIQ+VH
Sbjct: 121 LADEDLLQHKEYFGQYGKVLKVSMSRTASGVIQQFPNNTCSVYITYGKEEEAVRCIQAVH 180

Query: 183 CFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARSRV 242
            F+L+G+PL+ACFGTTKYCHAWLRNV C N +CLYLH+ GS +DSFTKDE++ A+  +RV
Sbjct: 181 GFILDGKPLKACFGTTKYCHAWLRNVACVNPDCLYLHEVGSQDDSFTKDEIISAY--TRV 238

Query: 243 LQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDN-----QIKGSCSGTGAAN 297
            QI GATN L   SG++LPPP+D     SS+ K + K PS N     +         ++ 
Sbjct: 239 QQITGATNILQHHSGNMLPPPLDAYCSDSSSAKPIIKVPSTNATSVPRYSPPSGSGSSSR 298

Query: 298 LTALPAVTSWA 308
            TALPA  SW 
Sbjct: 299 STALPAAASWG 309


>AT2G28540.2 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr2:12218652-12223594 FORWARD LENGTH=960
          Length = 960

 Score =  388 bits (996), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 178/309 (57%), Positives = 223/309 (72%), Gaps = 4/309 (1%)

Query: 3   MGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPY 62
           M +KGEK+CP+CTEEMDLTDQ LKPCKCGY+ICVWCWHHI+EMA+K+++EGRCPACR+ Y
Sbjct: 1   MNEKGEKTCPLCTEEMDLTDQHLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACRTRY 60

Query: 63  DKDRITSMAANCRRLVAEMNXXXXXXXXXXXXXXXDGRKHLNDVRVIQRHLVYIIGLPLN 122
           DK++I  M  +C RLVAE                 +GRK L  VRVIQR+LVY++ LP +
Sbjct: 61  DKEKIVGMTVSCERLVAEF-YIDRKKSQKAKPKPAEGRKDLTGVRVIQRNLVYVMSLPFD 119

Query: 123 LADEDLLQRREYFGRYGKVMKVSISRTATGLFQHSANNTCCVYISYSKESEAVRCIQSVH 182
           LADED+ QRREYFG+YGKV+KV++SRTA G  Q   NNTC VYI+YSKE EA+RCI+SVH
Sbjct: 120 LADEDMFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSVH 179

Query: 183 CFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARSRV 242
            F+L+GR L+ACFGT KYCHAWLRN+PC+N ECLYLH+ G+ EDSF+KDE + A  R  V
Sbjct: 180 GFILDGRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAHMRKMV 239

Query: 243 LQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDN---QIKGSCSGTGAANLT 299
             I G  ++  RRSGS+LPPPVDD     S+T+++ K   +N     K S      ++  
Sbjct: 240 QDITGWRDHYVRRSGSMLPPPVDDYVDNESSTRIIPKVVLNNVHSAAKNSPPNDSNSHSV 299

Query: 300 ALPAVTSWA 308
            LPA   W 
Sbjct: 300 TLPAGAMWG 308


>AT2G28540.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr2:12218652-12223446 FORWARD LENGTH=882
          Length = 882

 Score =  388 bits (996), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 178/309 (57%), Positives = 223/309 (72%), Gaps = 4/309 (1%)

Query: 3   MGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPY 62
           M +KGEK+CP+CTEEMDLTDQ LKPCKCGY+ICVWCWHHI+EMA+K+++EGRCPACR+ Y
Sbjct: 1   MNEKGEKTCPLCTEEMDLTDQHLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACRTRY 60

Query: 63  DKDRITSMAANCRRLVAEMNXXXXXXXXXXXXXXXDGRKHLNDVRVIQRHLVYIIGLPLN 122
           DK++I  M  +C RLVAE                 +GRK L  VRVIQR+LVY++ LP +
Sbjct: 61  DKEKIVGMTVSCERLVAEF-YIDRKKSQKAKPKPAEGRKDLTGVRVIQRNLVYVMSLPFD 119

Query: 123 LADEDLLQRREYFGRYGKVMKVSISRTATGLFQHSANNTCCVYISYSKESEAVRCIQSVH 182
           LADED+ QRREYFG+YGKV+KV++SRTA G  Q   NNTC VYI+YSKE EA+RCI+SVH
Sbjct: 120 LADEDMFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSVH 179

Query: 183 CFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARSRV 242
            F+L+GR L+ACFGT KYCHAWLRN+PC+N ECLYLH+ G+ EDSF+KDE + A  R  V
Sbjct: 180 GFILDGRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAHMRKMV 239

Query: 243 LQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDN---QIKGSCSGTGAANLT 299
             I G  ++  RRSGS+LPPPVDD     S+T+++ K   +N     K S      ++  
Sbjct: 240 QDITGWRDHYVRRSGSMLPPPVDDYVDNESSTRIIPKVVLNNVHSAAKNSPPNDSNSHSV 299

Query: 300 ALPAVTSWA 308
            LPA   W 
Sbjct: 300 TLPAGAMWG 308


>AT3G48070.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:17750878-17751978 FORWARD LENGTH=319
          Length = 319

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 6/63 (9%)

Query: 10  SCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPYDKDRITS 69
           SCPIC E++DLTD    PC CG+ +C++C   I       + +GRCP CR PY+++ I  
Sbjct: 243 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTIC------DGDGRCPGCRKPYERNTIKF 296

Query: 70  MAA 72
            A+
Sbjct: 297 EAS 299


>AT5G62910.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:25250830-25252015 FORWARD LENGTH=327
          Length = 327

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 6/60 (10%)

Query: 10  SCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPYDKDRITS 69
           SCPIC E++DLTD    PC CG+ +C++C   I       + +GRCP CR PY+++ + +
Sbjct: 251 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTIC------DGDGRCPGCRKPYERNMVKA 304


>AT3G48070.2 | Symbols:  | RING/U-box superfamily protein |
           chr3:17750878-17752297 FORWARD LENGTH=350
          Length = 350

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 6/63 (9%)

Query: 10  SCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPYDKDRITS 69
           SCPIC E++DLTD    PC CG+ +C++C   I       + +GRCP CR PY+++ I  
Sbjct: 243 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTIC------DGDGRCPGCRKPYERNTIKF 296

Query: 70  MAA 72
            A+
Sbjct: 297 EAS 299


>AT1G74870.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:28127093-28128275 FORWARD LENGTH=289
          Length = 289

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 7/61 (11%)

Query: 4   GDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPYD 63
           GD G++ CPIC+E MD TD + +PC CG+ IC++C + I      +E+E RCPACR  Y 
Sbjct: 206 GD-GDEECPICSELMDATDLEFEPCTCGFRICLFCHNKI------SENEARCPACRKDYK 258

Query: 64  K 64
           K
Sbjct: 259 K 259