Miyakogusa Predicted Gene

Lj5g3v0615780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0615780.1 Non Chatacterized Hit- tr|B9SGS6|B9SGS6_RICCO
Zinc finger protein, putative OS=Ricinus communis
GN=R,80.73,0,seg,NULL; CCCH zinc finger,NULL; zinc finger,Zinc finger,
CCCH-type; coiled-coil,NULL; SUBFAMILY NOT,CUFF.53485.1
         (324 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20280.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...   395   e-110

>AT2G20280.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr2:8740054-8742349 REVERSE LENGTH=371
          Length = 371

 Score =  395 bits (1016), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 211/265 (79%), Gaps = 2/265 (0%)

Query: 21  TFGLKNKNKSKAVQKYVQNLKSSVQPKTDP-KIXXXXXXXXXXXXXXXLNDLFKIAVSQP 79
           TFGLKNKNKSK VQKYVQ+LK SVQPK D  K                LN+LFK+A+SQP
Sbjct: 22  TFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKKEEEKAREQELNELFKVAISQP 81

Query: 80  KVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDQRDDEDTMEDWDQ 139
           KVPVGVDPKSILCEFFK GQC KGFKCKFSHDLN+QRKGEKIDIYSD RD++  M++WDQ
Sbjct: 82  KVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDTRDEDGDMDEWDQ 141

Query: 140 ATLEKVVESKKNEFNQNKQTDIVCKYFLDAVEKKQYGWFWECPNGGKNCHYRHALPPGYV 199
            TLEKVVESKKNE+NQNK TDIVCKYFLDAVEKKQYGWFW CPNGGK CHYRHALPPGYV
Sbjct: 142 ETLEKVVESKKNEYNQNKPTDIVCKYFLDAVEKKQYGWFWSCPNGGKECHYRHALPPGYV 201

Query: 200 LKSQMKALLDXXXXXXXXXX-XXXNQRAKVATTTPMTTELFFQWRKKKTEERDAKLASQQ 258
           LKSQMKALL+              N+RAK+ T T MT  LF +W++KK  ERDA LA+ Q
Sbjct: 202 LKSQMKALLEEESSKKLAVEDEIENERAKLQTATQMTPALFMEWKRKKIAERDAGLAASQ 261

Query: 259 AERAKNDRMSGRELFLSDASLFVDD 283
           AERAKNDRMSGRELFLS+ASLFVDD
Sbjct: 262 AERAKNDRMSGRELFLSNASLFVDD 286