Miyakogusa Predicted Gene

Lj5g3v0615420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0615420.1 tr|I0YSF8|I0YSF8_9CHLO Alternative oxidase
OS=Coccomyxa subellipsoidea C-169 PE=3
SV=1,30.83,0.00001,seg,NULL,CUFF.53439.1
         (267 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G53490.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   213   1e-55
AT5G02720.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    91   8e-19

>AT3G53490.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT5G02720.1); Has 70 Blast hits to
           70 proteins in 13 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:19832666-19834024 FORWARD LENGTH=225
          Length = 225

 Score =  213 bits (541), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/214 (50%), Positives = 134/214 (62%), Gaps = 9/214 (4%)

Query: 59  AIFLSFIFFTSFPGLMLCAVVSLNSIEVFRTHEWLKATSTVYFLCTEENKTVLPDVKRPH 118
              L FIFF+S PG +L   V+L+S+++F TH+W     TV+F C  ENKTVLPDVKR +
Sbjct: 14  GFLLCFIFFSSLPGTILTQEVTLDSVQIFTTHDWFSTKPTVFFQCKGENKTVLPDVKRTN 73

Query: 119 VFYSFNGNESWQPLSSFSSKKCKRCGLYEEDSITSDDVFEEWEFCPSDFTGPDGEYNRFK 178
           V YSFNG ESWQPL+     KCKRCG+YE+D +   D F+EWE CPSDFT  +G Y RFK
Sbjct: 74  VSYSFNGEESWQPLTELQGTKCKRCGIYEDDPLKY-DTFDEWELCPSDFTA-EGSYKRFK 131

Query: 179 EKEFNATFLCQECLSLAGVSSSSDGK-------GMHXXXXXXXXXXXXXXXXXGVMGAYK 231
           EKEFNATFLC  C  +   S+   G        GMH                 G++  YK
Sbjct: 132 EKEFNATFLCHGCSQVGAGSNKESGTEKEEQKGGMHPGIVVLIVVLLLGVVAVGLLVGYK 191

Query: 232 FWLKKIREQDQTRLLKLFEDGDYMEDELGLGSAI 265
           +W KK R+Q+Q R LKLFEDGD +EDELGL + +
Sbjct: 192 YWRKKKRQQEQARFLKLFEDGDDIEDELGLENTL 225


>AT5G02720.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G53490.1); Has 47 Blast hits to 47 proteins in
           13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr5:613782-614313 REVERSE
           LENGTH=138
          Length = 138

 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 6/139 (4%)

Query: 132 LSSFSSKKCKRCGLYEEDSITSDDVFEEWEFCPSDFTGPDGEYNRFKEKEFNATFLCQEC 191
           ++    +KCKRCG+YE+ S+ SD  F+ WE CP+DF+     Y  FKEKE NATF+C  C
Sbjct: 1   MTGIGGEKCKRCGIYEQGSLVSDKEFDVWEVCPTDFSASQ-VYMHFKEKEINATFVCHGC 59

Query: 192 LSL--AGVSSSSDGKGMHXXXXXXXXXXXXXXXXXGVMGA---YKFWLKKIREQDQTRLL 246
                A  +SS   +G +                  V+G    +K   +  +++DQ R +
Sbjct: 60  AKFHSAVAASSPQEEGYNGLTFMIAIIAGVLCTTLVVVGGVFMFKHTQRMKKQRDQARFM 119

Query: 247 KLFEDGDYMEDELGLGSAI 265
           +LFE+ D  EDELGL   I
Sbjct: 120 QLFEESDEPEDELGLDPVI 138