Miyakogusa Predicted Gene

Lj5g3v0612080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0612080.1 Non Chatacterized Hit- tr|F1S0W9|F1S0W9_PIG
Uncharacterized protein OS=Sus scrofa GN=NUP214 PE=4
SV=,26.63,4e-16,Nucleoporin domain,NULL; coiled-coil,NULL; seg,NULL;
SUBFAMILY NOT NAMED,NULL; NUCLEAR PORE COMPLEX ,CUFF.53369.1
         (1728 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55540.1 | Symbols: emb1011 | Nuclear pore complex protein | ...   454   e-127
AT1G55540.2 | Symbols: emb1011 | Nuclear pore complex protein | ...   454   e-127

>AT1G55540.1 | Symbols: emb1011 | Nuclear pore complex protein |
           chr1:20734759-20743049 REVERSE LENGTH=1816
          Length = 1816

 Score =  454 bits (1169), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/510 (46%), Positives = 335/510 (65%), Gaps = 10/510 (1%)

Query: 1   MSTVKIEE-LEGEGFPTSDYFFKSIGDPVPLKSNDYSFDPETLPSHPLALSERFRLTFVA 59
           MS V+IEE  EG+   T+DY+F+ IG+P+ +K +D  +D E  PS PLA+SER  + FVA
Sbjct: 1   MSRVEIEEDTEGDRISTNDYYFERIGEPISIKEDDAQYDLENPPSQPLAISERHAVLFVA 60

Query: 60  HSSGFFVAKTKDLIDSAKEFKDKGSGSPVQQLSLVDVSIGRVRILALSTDNLTLAASVSG 119
           HSSGFFV +T D+I ++K     G    +Q LSLVDV +G VRIL+LS D+  LA +V+ 
Sbjct: 61  HSSGFFVGRTNDVISASKNSNGNGDKVFIQDLSLVDVPVGDVRILSLSADDSILAVTVAA 120

Query: 120 DIRFYSVRDFVNKEVKQSFSCSLNNSTFVKDMRWITTSENSYVVLSNTGALYHGEPGFPL 179
           DI F+SV   + K+ K SFS S + S FVKD RW    ++SY+VLSNTG L+HG    P 
Sbjct: 121 DIHFFSVDSLLKKDAKPSFSYSPDESGFVKDFRWRRNDKHSYLVLSNTGKLFHGIDNAPP 180

Query: 180 KLVMENVDAVDWGVKGRFVVVARKNALSILSTKFEERVSISLPFESWISDYADNVSIKVD 239
           + VM+ VDAV+W  KG ++ VA+ N+L I S+KF E+  I+L F+SWI D  ++  +KVD
Sbjct: 181 RHVMDAVDAVEWSSKGSYIAVAQDNSLRIFSSKFNEKRCIALSFDSWIGDSDEDCFVKVD 240

Query: 240 SIKCVRPDSIIIGCFQLTEDGKEENYLIQVIRSRLGEIADGCSELVVRSFYEIYPCLTDD 299
           SI+ VR + I++GCFQL E G+EENYL+QVIRS  G+I+DG + LV  SF +++PC  DD
Sbjct: 241 SIRWVRNNCILLGCFQLIE-GREENYLVQVIRSPDGKISDGSTNLVALSFSDLFPCSMDD 299

Query: 300 IVPIGTGPYLLLTYLEQCQLAINANVKNTDDHIVLLGWSIDGDKSEAAVGYITEDKYIPR 359
           +VP+G GP+LL +Y++QC+LA+ AN K+ D+HIVLL WS   DKS  +V  I  + ++PR
Sbjct: 300 LVPVGVGPHLLFSYIDQCKLAVTANRKSIDEHIVLLDWSSGDDKSAVSVVDIDRETFLPR 359

Query: 360 IXXXXXXXXXXXXXXCIDNVSIYDKVEIQLGGEERNELSPYCVLLCLTLEGKLVMFHVAS 419
           I              CID VSI   V ++ G +E  EL PY VL+CLTLEGKLVMF+VAS
Sbjct: 360 IGLQENNDDNTVMGLCIDRVSIEGTVNVRSGDDELKELQPYFVLVCLTLEGKLVMFNVAS 419

Query: 420 LAGSKVSPEFD-STVHDEEDAFVRPPVDESSTSHGLQKKTQELDKAVEVIE-NLKSKPHA 477
           +AG   S + D ++  D EDA+   P+ E   S    +K Q+L+ AV+  + +L ++  +
Sbjct: 420 VAGRPASSDTDLASSSDIEDAYT--PLIEDDLSKQSSEKHQQLNIAVQNDQKHLNTEKFS 477

Query: 478 NPNQITQTEDYSKYLEVESVKNVQSLNSDN 507
              ++     +SK  E ESVK+  S++ DN
Sbjct: 478 TEQRLPNENIFSK--EFESVKS--SVSGDN 503



 Score =  332 bits (850), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 162/311 (52%), Positives = 219/311 (70%), Gaps = 4/311 (1%)

Query: 709  DFSKQFGNINEMTKELDLLLKSIEETGGFRDACTRSLHSSVGEVEQSMDTISKQCKIWTC 768
            + S Q  NINEM +E+D LL+SIE  GGF+D+C   L S+V E+EQ +++++ +C+ W  
Sbjct: 726  NMSNQPSNINEMAREMDTLLQSIEGPGGFKDSCAFILKSNVEELEQGLESLAGKCQTWKS 785

Query: 769  QVDEHLEQVHYLLNKTIQVVARKIYIESIYKQASDSRYWDLWNRQKLNSELELKRQHILS 828
             + E   ++ +LL+KTIQV+A+K Y+E +YKQ +D++YW LWNRQKLN ELE KRQHI+ 
Sbjct: 786  TIHEQQAEIQHLLDKTIQVLAKKTYMEGMYKQTADNQYWQLWNRQKLNPELEAKRQHIMK 845

Query: 829  LNQDLTYQLIELERHFNALELNKFSQYGGHRKSLGAFQNRHGPSRSIQSLHSLHSAIGSQ 888
            LN+DLT+QLIELER+FN LEL+++++ GGH  +     NR  PSR +QSLHSLH+ + SQ
Sbjct: 846  LNKDLTHQLIELERYFNRLELDRYNEDGGHPVARRGVPNRSAPSRRVQSLHSLHNTMSSQ 905

Query: 889  LVAAENLSECLSKQIAALSLRSASEDQKNVK-ELFETIGIPYDASFGSPDIKGFMKTPPS 947
            L AAE LSECLSKQ+  L + S    +KNVK ELFETIGIPYDASF SPD         +
Sbjct: 906  LAAAEQLSECLSKQMTYLKIDSPV--KKNVKQELFETIGIPYDASFSSPDAVKAKNASSA 963

Query: 948  KKLLFPDLTINKNQSMR-VQASAMKSCEPETSXXXXDSLDQSLTCFEPPKTIIKRMLLQD 1006
            K LL   +  + NQ  R  Q+SAMK+ +PET+    +SLD++   FEPPKT +KRMLLQ+
Sbjct: 964  KNLLLSSIPASINQQSRQRQSSAMKNSDPETARRRRESLDRNWAAFEPPKTTVKRMLLQE 1023

Query: 1007 LQKPKSNESFI 1017
             QK   N+  +
Sbjct: 1024 QQKTGMNQQTV 1034



 Score = 74.3 bits (181), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 57/105 (54%), Gaps = 15/105 (14%)

Query: 1470 PNQSFSKSNPFGVSFNNAS---SSAITFSVPSGELFRXXXXXXXXXXXXXXXXXTNSGAF 1526
            PN    K+NPFG  F NA+   S+    +VPSGELF+                     A 
Sbjct: 1565 PNPGAPKTNPFGGPFGNATTTTSNPFNMTVPSGELFKPASFNFQNPQPSQP-------AG 1617

Query: 1527 SGSFNTGAAVPTQAP--SAFGQPAQIGSGQQVLGSVLGTFGQSRQ 1569
             GSF   +  P+Q P  S FGQP+QIG GQQ LGSVLG+FGQSRQ
Sbjct: 1618 FGSF---SVTPSQTPAQSGFGQPSQIGGGQQALGSVLGSFGQSRQ 1659


>AT1G55540.2 | Symbols: emb1011 | Nuclear pore complex protein |
           chr1:20734759-20743049 REVERSE LENGTH=1819
          Length = 1819

 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/510 (46%), Positives = 335/510 (65%), Gaps = 10/510 (1%)

Query: 1   MSTVKIEE-LEGEGFPTSDYFFKSIGDPVPLKSNDYSFDPETLPSHPLALSERFRLTFVA 59
           MS V+IEE  EG+   T+DY+F+ IG+P+ +K +D  +D E  PS PLA+SER  + FVA
Sbjct: 1   MSRVEIEEDTEGDRISTNDYYFERIGEPISIKEDDAQYDLENPPSQPLAISERHAVLFVA 60

Query: 60  HSSGFFVAKTKDLIDSAKEFKDKGSGSPVQQLSLVDVSIGRVRILALSTDNLTLAASVSG 119
           HSSGFFV +T D+I ++K     G    +Q LSLVDV +G VRIL+LS D+  LA +V+ 
Sbjct: 61  HSSGFFVGRTNDVISASKNSNGNGDKVFIQDLSLVDVPVGDVRILSLSADDSILAVTVAA 120

Query: 120 DIRFYSVRDFVNKEVKQSFSCSLNNSTFVKDMRWITTSENSYVVLSNTGALYHGEPGFPL 179
           DI F+SV   + K+ K SFS S + S FVKD RW    ++SY+VLSNTG L+HG    P 
Sbjct: 121 DIHFFSVDSLLKKDAKPSFSYSPDESGFVKDFRWRRNDKHSYLVLSNTGKLFHGIDNAPP 180

Query: 180 KLVMENVDAVDWGVKGRFVVVARKNALSILSTKFEERVSISLPFESWISDYADNVSIKVD 239
           + VM+ VDAV+W  KG ++ VA+ N+L I S+KF E+  I+L F+SWI D  ++  +KVD
Sbjct: 181 RHVMDAVDAVEWSSKGSYIAVAQDNSLRIFSSKFNEKRCIALSFDSWIGDSDEDCFVKVD 240

Query: 240 SIKCVRPDSIIIGCFQLTEDGKEENYLIQVIRSRLGEIADGCSELVVRSFYEIYPCLTDD 299
           SI+ VR + I++GCFQL E G+EENYL+QVIRS  G+I+DG + LV  SF +++PC  DD
Sbjct: 241 SIRWVRNNCILLGCFQLIE-GREENYLVQVIRSPDGKISDGSTNLVALSFSDLFPCSMDD 299

Query: 300 IVPIGTGPYLLLTYLEQCQLAINANVKNTDDHIVLLGWSIDGDKSEAAVGYITEDKYIPR 359
           +VP+G GP+LL +Y++QC+LA+ AN K+ D+HIVLL WS   DKS  +V  I  + ++PR
Sbjct: 300 LVPVGVGPHLLFSYIDQCKLAVTANRKSIDEHIVLLDWSSGDDKSAVSVVDIDRETFLPR 359

Query: 360 IXXXXXXXXXXXXXXCIDNVSIYDKVEIQLGGEERNELSPYCVLLCLTLEGKLVMFHVAS 419
           I              CID VSI   V ++ G +E  EL PY VL+CLTLEGKLVMF+VAS
Sbjct: 360 IGLQENNDDNTVMGLCIDRVSIEGTVNVRSGDDELKELQPYFVLVCLTLEGKLVMFNVAS 419

Query: 420 LAGSKVSPEFD-STVHDEEDAFVRPPVDESSTSHGLQKKTQELDKAVEVIE-NLKSKPHA 477
           +AG   S + D ++  D EDA+   P+ E   S    +K Q+L+ AV+  + +L ++  +
Sbjct: 420 VAGRPASSDTDLASSSDIEDAYT--PLIEDDLSKQSSEKHQQLNIAVQNDQKHLNTEKFS 477

Query: 478 NPNQITQTEDYSKYLEVESVKNVQSLNSDN 507
              ++     +SK  E ESVK+  S++ DN
Sbjct: 478 TEQRLPNENIFSK--EFESVKS--SVSGDN 503



 Score =  326 bits (836), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 162/314 (51%), Positives = 219/314 (69%), Gaps = 7/314 (2%)

Query: 709  DFSKQFGNINEMTKELDLLLKSIEETGGFRDACTRSLHSSVGEVEQSMDTISKQCKIWTC 768
            + S Q  NINEM +E+D LL+SIE  GGF+D+C   L S+V E+EQ +++++ +C+ W  
Sbjct: 726  NMSNQPSNINEMAREMDTLLQSIEGPGGFKDSCAFILKSNVEELEQGLESLAGKCQTWKS 785

Query: 769  QVDEHLEQVHYLLNKTIQVVARKIYIESIYKQASDSRYWDLWNRQKLNSELELKRQHILS 828
             + E   ++ +LL+KTIQV+A+K Y+E +YKQ +D++YW LWNRQKLN ELE KRQHI+ 
Sbjct: 786  TIHEQQAEIQHLLDKTIQVLAKKTYMEGMYKQTADNQYWQLWNRQKLNPELEAKRQHIMK 845

Query: 829  LNQDLTYQLIELERHFNALELNKFSQYGGHRKSLGAFQNRHGPSRSIQSLHSLHSAIGSQ 888
            LN+DLT+QLIELER+FN LEL+++++ GGH  +     NR  PSR +QSLHSLH+ + SQ
Sbjct: 846  LNKDLTHQLIELERYFNRLELDRYNEDGGHPVARRGVPNRSAPSRRVQSLHSLHNTMSSQ 905

Query: 889  LVAAENLSECLSKQIAALSLRSASEDQKNVK-ELFETIGIPYDASFGSPDIKGFMKTPPS 947
            L AAE LSECLSKQ+  L + S    +KNVK ELFETIGIPYDASF SPD         +
Sbjct: 906  LAAAEQLSECLSKQMTYLKIDSPV--KKNVKQELFETIGIPYDASFSSPDAVKAKNASSA 963

Query: 948  KKLLFPDLTINKNQSMR-VQASAMKSCEPETSXXXXDSLDQSL---TCFEPPKTIIKRML 1003
            K LL   +  + NQ  R  Q+SAMK+ +PET+    +SLD+ +     FEPPKT +KRML
Sbjct: 964  KNLLLSSIPASINQQSRQRQSSAMKNSDPETARRRRESLDRVIFNWAAFEPPKTTVKRML 1023

Query: 1004 LQDLQKPKSNESFI 1017
            LQ+ QK   N+  +
Sbjct: 1024 LQEQQKTGMNQQTV 1037



 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 57/105 (54%), Gaps = 15/105 (14%)

Query: 1470 PNQSFSKSNPFGVSFNNAS---SSAITFSVPSGELFRXXXXXXXXXXXXXXXXXTNSGAF 1526
            PN    K+NPFG  F NA+   S+    +VPSGELF+                     A 
Sbjct: 1568 PNPGAPKTNPFGGPFGNATTTTSNPFNMTVPSGELFKPASFNFQNPQPSQP-------AG 1620

Query: 1527 SGSFNTGAAVPTQAP--SAFGQPAQIGSGQQVLGSVLGTFGQSRQ 1569
             GSF   +  P+Q P  S FGQP+QIG GQQ LGSVLG+FGQSRQ
Sbjct: 1621 FGSF---SVTPSQTPAQSGFGQPSQIGGGQQALGSVLGSFGQSRQ 1662