Miyakogusa Predicted Gene

Lj5g3v0575460.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0575460.4 Non Chatacterized Hit- tr|D8TNC6|D8TNC6_VOLCA
Putative uncharacterized protein (Fragment) OS=Volvox
,48.94,0.0000000000003, ,CUFF.53338.4
         (92 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19940.1 | Symbols:  | Plastid-lipid associated protein PAP /...   153   3e-38
AT5G19940.2 | Symbols:  | Plastid-lipid associated protein PAP /...   126   2e-30

>AT5G19940.1 | Symbols:  | Plastid-lipid associated protein PAP /
           fibrillin family protein | chr5:6739693-6740661 FORWARD
           LENGTH=239
          Length = 239

 Score =  153 bits (386), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 85/92 (92%)

Query: 1   MIQVVEAPDIVRNKISFSAFGFLDGEVSLNGKLKALDTEWIQVVFEAPELKLGSWEVQYG 60
           MIQ ++APDIVRNK+S +AFGFLDG+VSL GKLKALD+EW+QV+FE PE+K+GS E +YG
Sbjct: 147 MIQAIDAPDIVRNKVSINAFGFLDGDVSLTGKLKALDSEWVQVIFEPPEIKVGSLEFKYG 206

Query: 61  GQSEVKLRITYVDEKIRLGLGSRGSLFVFQRR 92
            +SEVKLRITYVDEK+RLGLGS+GSLFVF+RR
Sbjct: 207 FESEVKLRITYVDEKLRLGLGSKGSLFVFRRR 238


>AT5G19940.2 | Symbols:  | Plastid-lipid associated protein PAP /
           fibrillin family protein | chr5:6739693-6740747 FORWARD
           LENGTH=235
          Length = 235

 Score =  126 bits (317), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 70/77 (90%)

Query: 1   MIQVVEAPDIVRNKISFSAFGFLDGEVSLNGKLKALDTEWIQVVFEAPELKLGSWEVQYG 60
           MIQ ++APDIVRNK+S +AFGFLDG+VSL GKLKALD+EW+QV+FE PE+K+GS E +YG
Sbjct: 147 MIQAIDAPDIVRNKVSINAFGFLDGDVSLTGKLKALDSEWVQVIFEPPEIKVGSLEFKYG 206

Query: 61  GQSEVKLRITYVDEKIR 77
            +SEVKLRITYVDEK+R
Sbjct: 207 FESEVKLRITYVDEKLR 223