Miyakogusa Predicted Gene
- Lj5g3v0575450.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0575450.1 tr|F2CX82|F2CX82_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,41.33,5e-16,FAMILY NOT
NAMED,NULL,CUFF.53334.1
(405 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G32920.3 | Symbols: | glycine-rich protein | chr4:15888153-1... 131 7e-31
AT4G32920.2 | Symbols: | glycine-rich protein | chr4:15888153-1... 131 7e-31
AT4G32920.1 | Symbols: | glycine-rich protein | chr4:15888153-1... 131 7e-31
AT5G11700.2 | Symbols: | BEST Arabidopsis thaliana protein matc... 119 5e-27
AT5G11700.1 | Symbols: | LOCATED IN: vacuole; EXPRESSED IN: 24 ... 119 5e-27
AT5G47020.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 86 6e-17
>AT4G32920.3 | Symbols: | glycine-rich protein |
chr4:15888153-15896006 REVERSE LENGTH=1432
Length = 1432
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 99/161 (61%), Gaps = 1/161 (0%)
Query: 8 VIVHLWLNPKMFMDAKHGSIVQISFFEASNLQVLKDSSLIHSNANLGVRGQSFLNLSELG 67
V V L L +MF+D +I+ S E SNL VLK+SS+I SN NLGV GQ LNL+ G
Sbjct: 428 VKVFLMLKSRMFIDGGGVTILGTSMLEISNLLVLKESSVIQSNGNLGVHGQGLLNLTGTG 487
Query: 68 NLIEAQHLILSLLTNSKVGSRPVLRGPLEVSGEDNMMVAQLYWEIENGMVELPHPPEKCN 127
+ IEAQ LILSL + +VG+ VLRGPL+ + + +LY + ++ VEL HPPE CN
Sbjct: 488 DTIEAQRLILSLFYSIQVGAGAVLRGPLQ-NASTGGLTPKLYCQRQDCPVELLHPPEDCN 546
Query: 128 KNSSWILTLQICRVEIAIVEVATTGSGLRFPWIRRLSVEVS 168
NSS TLQICRVE VE GS ++F R + V S
Sbjct: 547 VNSSLPFTLQICRVEDITVEGLIKGSVIQFHLARTVLVRSS 587
>AT4G32920.2 | Symbols: | glycine-rich protein |
chr4:15888153-15896006 REVERSE LENGTH=1432
Length = 1432
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 99/161 (61%), Gaps = 1/161 (0%)
Query: 8 VIVHLWLNPKMFMDAKHGSIVQISFFEASNLQVLKDSSLIHSNANLGVRGQSFLNLSELG 67
V V L L +MF+D +I+ S E SNL VLK+SS+I SN NLGV GQ LNL+ G
Sbjct: 428 VKVFLMLKSRMFIDGGGVTILGTSMLEISNLLVLKESSVIQSNGNLGVHGQGLLNLTGTG 487
Query: 68 NLIEAQHLILSLLTNSKVGSRPVLRGPLEVSGEDNMMVAQLYWEIENGMVELPHPPEKCN 127
+ IEAQ LILSL + +VG+ VLRGPL+ + + +LY + ++ VEL HPPE CN
Sbjct: 488 DTIEAQRLILSLFYSIQVGAGAVLRGPLQ-NASTGGLTPKLYCQRQDCPVELLHPPEDCN 546
Query: 128 KNSSWILTLQICRVEIAIVEVATTGSGLRFPWIRRLSVEVS 168
NSS TLQICRVE VE GS ++F R + V S
Sbjct: 547 VNSSLPFTLQICRVEDITVEGLIKGSVIQFHLARTVLVRSS 587
>AT4G32920.1 | Symbols: | glycine-rich protein |
chr4:15888153-15896006 REVERSE LENGTH=1432
Length = 1432
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 99/161 (61%), Gaps = 1/161 (0%)
Query: 8 VIVHLWLNPKMFMDAKHGSIVQISFFEASNLQVLKDSSLIHSNANLGVRGQSFLNLSELG 67
V V L L +MF+D +I+ S E SNL VLK+SS+I SN NLGV GQ LNL+ G
Sbjct: 428 VKVFLMLKSRMFIDGGGVTILGTSMLEISNLLVLKESSVIQSNGNLGVHGQGLLNLTGTG 487
Query: 68 NLIEAQHLILSLLTNSKVGSRPVLRGPLEVSGEDNMMVAQLYWEIENGMVELPHPPEKCN 127
+ IEAQ LILSL + +VG+ VLRGPL+ + + +LY + ++ VEL HPPE CN
Sbjct: 488 DTIEAQRLILSLFYSIQVGAGAVLRGPLQ-NASTGGLTPKLYCQRQDCPVELLHPPEDCN 546
Query: 128 KNSSWILTLQICRVEIAIVEVATTGSGLRFPWIRRLSVEVS 168
NSS TLQICRVE VE GS ++F R + V S
Sbjct: 547 VNSSLPFTLQICRVEDITVEGLIKGSVIQFHLARTVLVRSS 587
>AT5G11700.2 | Symbols: | BEST Arabidopsis thaliana protein match
is: glycine-rich protein (TAIR:AT4G32920.3); Has 8203
Blast hits to 3102 proteins in 389 species: Archae - 3;
Bacteria - 5624; Metazoa - 852; Fungi - 139; Plants -
704; Viruses - 77; Other Eukaryotes - 804 (source: NCBI
BLink). | chr5:3762961-3771123 REVERSE LENGTH=1476
Length = 1476
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Query: 8 VIVHLWLNPKMFMDAKHG-SIVQISFFEASNLQVLKDSSLIHSNANLGVRGQSFLNLSEL 66
V + L N ++ +D G + V S EASNL VL+ SS+I SNANLGV GQ FLNL+
Sbjct: 438 VKMFLMWNSELHLDGGGGDTTVSTSMLEASNLFVLRGSSVIRSNANLGVHGQGFLNLTGP 497
Query: 67 GNLIEAQHLILSLLTNSKVGSRPVLRGPLEVSGEDNMMVAQLYWEIENGMVELPHPPEKC 126
G+ IEAQ L+LSL VG +LR PL ++ + + +LY E ++ EL +PPE C
Sbjct: 498 GDSIEAQRLVLSLFYRIYVGPGSILRAPL-LNASRDAVTPKLYCERQDCPYELLNPPEDC 556
Query: 127 NKNSSWILTLQICRVEIAIVEVATTGSGLRFPWIRRLSVEVSIDV 171
N N+S TLQICRVE +VE GS + F + +++E S ++
Sbjct: 557 NVNASLSFTLQICRVEDILVEGFIKGSVVHFHRAKTVTLEPSGEI 601
>AT5G11700.1 | Symbols: | LOCATED IN: vacuole; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: glycine-rich
protein (TAIR:AT4G32920.3); Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink). |
chr5:3762961-3771123 REVERSE LENGTH=1419
Length = 1419
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Query: 8 VIVHLWLNPKMFMDAKHG-SIVQISFFEASNLQVLKDSSLIHSNANLGVRGQSFLNLSEL 66
V + L N ++ +D G + V S EASNL VL+ SS+I SNANLGV GQ FLNL+
Sbjct: 438 VKMFLMWNSELHLDGGGGDTTVSTSMLEASNLFVLRGSSVIRSNANLGVHGQGFLNLTGP 497
Query: 67 GNLIEAQHLILSLLTNSKVGSRPVLRGPLEVSGEDNMMVAQLYWEIENGMVELPHPPEKC 126
G+ IEAQ L+LSL VG +LR PL ++ + + +LY E ++ EL +PPE C
Sbjct: 498 GDSIEAQRLVLSLFYRIYVGPGSILRAPL-LNASRDAVTPKLYCERQDCPYELLNPPEDC 556
Query: 127 NKNSSWILTLQICRVEIAIVEVATTGSGLRFPWIRRLSVEVSIDV 171
N N+S TLQICRVE +VE GS + F + +++E S ++
Sbjct: 557 NVNASLSFTLQICRVEDILVEGFIKGSVVHFHRAKTVTLEPSGEI 601
>AT5G47020.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G11700.2);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink). | chr5:19082005-19089800 FORWARD
LENGTH=1421
Length = 1421
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Query: 12 LWLNPKMFMDAKHGSIVQISFFEASNLQVLKDSSLIHSNANLGVRGQSFLNLSELGNLIE 71
L LN + +D + V S E NL VLK S+I SN NLGV GQ L LS G+ I+
Sbjct: 418 LMLNSVIQIDGEGNPAVPSSVLEVRNLAVLKGKSVITSNTNLGVYGQGMLTLSGPGDAIK 477
Query: 72 AQHLILSLLTNSKVGSRPVLRGPLEVSGEDNMMVAQLYWEIENGMVELPHPPEKCNKNSS 131
Q L LS N VG +L+ PL+ E V Q E + ++L PP+ C+ N +
Sbjct: 478 GQRLSLSQFYNITVGPGSILQAPLD-DYESKNAVTQTLCESKTCPIDLISPPDDCHVNYT 536
Query: 132 WILTLQICRVEIAIVEVATTGS 153
+LQICRVE +V GS
Sbjct: 537 LSFSLQICRVEDILVRGLVKGS 558