Miyakogusa Predicted Gene

Lj5g3v0554400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0554400.1 tr|B9H7G8|B9H7G8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_559256 PE=4
SV=1,63.64,7e-18,DUF1997,Protein of unknown function
DUF1997,CUFF.53391.1
         (118 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31115.1 | Symbols:  | Protein of unknown function (DUF1997) ...    68   1e-12
AT4G31115.2 | Symbols:  | Protein of unknown function (DUF1997) ...    68   1e-12

>AT4G31115.1 | Symbols:  | Protein of unknown function (DUF1997) |
           chr4:15130243-15131847 FORWARD LENGTH=250
          Length = 250

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 6/81 (7%)

Query: 40  SNSKKANLFAAKKDRVKLPTYDDVLGGKRYPISEFLSQPSAIASVLNTKALQSFQSL--G 97
           S+ KKAN+ A++K R+KL    ++ G K    SEFL  PS + +V+N KALQS+  +   
Sbjct: 53  SSLKKANISASRKQRIKL----EINGEKELTFSEFLKHPSGMEAVINAKALQSYHLVDDS 108

Query: 98  ANTYRCELPKLRFFNFEASPI 118
            +TYRC LPK++  +FE  P+
Sbjct: 109 DDTYRCTLPKVQLMSFEVYPV 129


>AT4G31115.2 | Symbols:  | Protein of unknown function (DUF1997) |
           chr4:15130243-15131847 FORWARD LENGTH=274
          Length = 274

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 6/81 (7%)

Query: 40  SNSKKANLFAAKKDRVKLPTYDDVLGGKRYPISEFLSQPSAIASVLNTKALQSFQSL--G 97
           S+ KKAN+ A++K R+KL    ++ G K    SEFL  PS + +V+N KALQS+  +   
Sbjct: 77  SSLKKANISASRKQRIKL----EINGEKELTFSEFLKHPSGMEAVINAKALQSYHLVDDS 132

Query: 98  ANTYRCELPKLRFFNFEASPI 118
            +TYRC LPK++  +FE  P+
Sbjct: 133 DDTYRCTLPKVQLMSFEVYPV 153