Miyakogusa Predicted Gene

Lj5g3v0554340.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0554340.2 CUFF.53381.2
         (198 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G24330.1 | Symbols:  | Protein of unknown function (DUF2296) ...   209   7e-55
AT4G31080.1 | Symbols:  | Protein of unknown function (DUF2296) ...   203   5e-53
AT4G31080.2 | Symbols:  | Protein of unknown function (DUF2296) ...   186   1e-47

>AT2G24330.1 | Symbols:  | Protein of unknown function (DUF2296) |
           chr2:10347340-10349566 REVERSE LENGTH=408
          Length = 408

 Score =  209 bits (533), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 106/196 (54%), Positives = 128/196 (65%)

Query: 2   GEEKETSXXXXXXXXXXXXXQRKGLISRIWNVIFRSNGNDLEKRLQHLSKAEASVMNKIA 61
           G EK  S             +RKGL SR+WN IFR  G+D EKRL+++SK EA+V N++ 
Sbjct: 16  GGEKNDSAVVLSASGEKKTTKRKGLFSRLWNAIFRVRGDDFEKRLKNISKEEATVRNRMK 75

Query: 62  NRSRFRSRILRNLILFSVLFQVIAVVYATMTTRSVGMNWKMRAIRVLPMFLLPALSSAAY 121
            RS  R   +RNLI FSV F+VIAV YA MTTR   ++WK+R+ R+LPMFLLPA++   Y
Sbjct: 76  RRSITRRNFIRNLIAFSVFFEVIAVSYAIMTTRDEDLDWKLRSFRILPMFLLPAVAFLLY 135

Query: 122 SFFVSFIRMCDRRDQKTLETLRAERQAKIDELKEKTNYYITQQLIQRYDTDPXXXXXXXX 181
           S  V F RMCDRRDQ TLE L+AE   KI+ELKE+TNYYITQQLIQRYD DP        
Sbjct: 136 SSLVGFWRMCDRRDQHTLEKLQAEMLGKINELKERTNYYITQQLIQRYDPDPAAKAAAAT 195

Query: 182 XXXXXXXXDSGLKVHV 197
                   +SGLKV V
Sbjct: 196 VLASKLGAESGLKVFV 211


>AT4G31080.1 | Symbols:  | Protein of unknown function (DUF2296) |
           chr4:15121186-15123072 FORWARD LENGTH=409
          Length = 409

 Score =  203 bits (517), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 130/176 (73%)

Query: 22  QRKGLISRIWNVIFRSNGNDLEKRLQHLSKAEASVMNKIANRSRFRSRILRNLILFSVLF 81
           ++ G  SR+WN IFR  G+D EKRLQ++S+ EA+V++++  RS    ++ RNLI+ SVLF
Sbjct: 37  KQNGFFSRLWNGIFRVRGDDFEKRLQYISREEATVLSRMKRRSISWRKLTRNLIVSSVLF 96

Query: 82  QVIAVVYATMTTRSVGMNWKMRAIRVLPMFLLPALSSAAYSFFVSFIRMCDRRDQKTLET 141
           ++IAV YA +TTR+  ++W+MR+ R+LPMF+LPA+S+ AYS  VSF +M DRRDQKTLE 
Sbjct: 97  EIIAVGYAILTTRTEDLDWRMRSFRILPMFILPAVSALAYSSIVSFSKMFDRRDQKTLEK 156

Query: 142 LRAERQAKIDELKEKTNYYITQQLIQRYDTDPXXXXXXXXXXXXXXXXDSGLKVHV 197
           LRAER AKI+ELKE+TNYY TQQLIQRYD DP                DSGLKV++
Sbjct: 157 LRAERLAKINELKERTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKVYL 212


>AT4G31080.2 | Symbols:  | Protein of unknown function (DUF2296) |
           chr4:15121186-15123072 FORWARD LENGTH=443
          Length = 443

 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/210 (46%), Positives = 130/210 (61%), Gaps = 34/210 (16%)

Query: 22  QRKGLISRIWNVIFRSNGNDLEKRLQHLSKAEASVMNKIANRSRFRSRILRNLILFSVLF 81
           ++ G  SR+WN IFR  G+D EKRLQ++S+ EA+V++++  RS    ++ RNLI+ SVLF
Sbjct: 37  KQNGFFSRLWNGIFRVRGDDFEKRLQYISREEATVLSRMKRRSISWRKLTRNLIVSSVLF 96

Query: 82  QVIAVVYATMTTRSVGMNWKMRAIRVLPMFLLPALSSAAYSFFVSFIRMCDRRDQKTLET 141
           ++IAV YA +TTR+  ++W+MR+ R+LPMF+LPA+S+ AYS  VSF +M DRRDQKTLE 
Sbjct: 97  EIIAVGYAILTTRTEDLDWRMRSFRILPMFILPAVSALAYSSIVSFSKMFDRRDQKTLEK 156

Query: 142 LRAERQAKIDELKEKTNYYITQQLI----------------------------------Q 167
           LRAER AKI+ELKE+TNYY TQQLI                                  Q
Sbjct: 157 LRAERLAKINELKERTNYYTTQQLIQAWHSHATKERSMFADLKRLTTACRAGANRIVLMQ 216

Query: 168 RYDTDPXXXXXXXXXXXXXXXXDSGLKVHV 197
           RYD DP                DSGLKV++
Sbjct: 217 RYDPDPAAKAAAATVLASKLGADSGLKVYL 246