Miyakogusa Predicted Gene

Lj5g3v0539630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0539630.1 tr|B9HAJ6|B9HAJ6_POPTR Ein3-binding f-box protein
4 OS=Populus trichocarpa GN=EBF4 PE=4 SV=1,51.81,3e-17,SUBFAMILY NOT
NAMED,NULL; F-BOX/LEUCINE RICH REPEAT
PROTEIN,NULL,NODE_34412_length_216_cov_656.555542.path1.1
         (84 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1...    96   4e-21
AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 | chr...    69   9e-13

>AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1
          | chr2:10848018-10850275 REVERSE LENGTH=628
          Length = 628

 Score = 96.3 bits (238), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 57/84 (67%), Gaps = 3/84 (3%)

Query: 1  MSKVLGFSGTDDFCPGGTIYTNPKEASFFLSHGLPVDVYFPARKRSRISAPFVFSREWLE 60
          MS++  F+G +DF   G IY NPK+AS  LS G   DVYFP  KRSR+ AP +FS     
Sbjct: 1  MSQIFSFAGENDFYRRGAIYPNPKDASLLLSLGSFADVYFPPSKRSRVVAPTIFSA---F 57

Query: 61 QKQETSIETLPDECLFEIFRKLPG 84
          +K+  SI+ LPDECLFEIFR+L G
Sbjct: 58 EKKPVSIDVLPDECLFEIFRRLSG 81


>AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 |
          chr5:8794842-8796882 REVERSE LENGTH=623
          Length = 623

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 12/83 (14%)

Query: 1  MSKVLGFSGTDDFCPGGTIYTNPKEASFFLSHGLPVDVYFPARKRSRISAPFVFSREWLE 60
          MS +  FSG +D   GG++Y +P         G    VY+PARKR R++A   +S    E
Sbjct: 1  MSGIFRFSGDEDCLLGGSMYLSP---------GSCPGVYYPARKRLRVAATSFYSG--FE 49

Query: 61 QKQETSIETLPDECLFEIFRKLP 83
          +KQ TSI+ LP+ECLFEI R+LP
Sbjct: 50 EKQ-TSIDVLPEECLFEILRRLP 71