Miyakogusa Predicted Gene

Lj5g3v0529130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0529130.1 CUFF.53213.1
         (296 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: UPF0103/Me...   453   e-128

>AT2G25280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           UPF0103/Mediator of ErbB2-driven cell motility (Memo),
           related (InterPro:IPR002737); Has 1074 Blast hits to
           1072 proteins in 474 species: Archae - 213; Bacteria -
           366; Metazoa - 159; Fungi - 135; Plants - 54; Viruses -
           0; Other Eukaryotes - 147 (source: NCBI BLink). |
           chr2:10762639-10764631 REVERSE LENGTH=291
          Length = 291

 Score =  453 bits (1165), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/288 (74%), Positives = 251/288 (87%)

Query: 4   KVRKPSHAGSWYTDNPKQLSEELEGWLKSCGLTKSPDVRGVIAPHXXXXXXXXXXXXXFG 63
           K+R+P+HAGSWYTDNP +LS +LE WL + GLTKSPDVRGVIAPH             F 
Sbjct: 3   KIRQPTHAGSWYTDNPTKLSSDLEEWLNATGLTKSPDVRGVIAPHAGYSYSGRAAAYAFA 62

Query: 64  NIDPSNITRVFLLGPSHHYYTAKCALSTATVYKTPIGDLQIDLEVNEQLKATGKFEMMDI 123
           NIDP+NI+R+FLLGPSHH+YT KCALSTATVYKTPIG+L +D+E+ ++++A GKF MMD+
Sbjct: 63  NIDPTNISRIFLLGPSHHFYTPKCALSTATVYKTPIGNLPVDVEMIKEIRAMGKFGMMDL 122

Query: 124 RVDEAEHSMEMHLPYLAKVFEGHPVKIVPILVGAVSAENEAMYGEILAKYVDDPTNFFSI 183
           RVDEAEHSMEMHLPYLAKVFEG+ VK+VPILVGAVS ENEAMYGE+LAKYVDDP NFFS+
Sbjct: 123 RVDEAEHSMEMHLPYLAKVFEGNNVKVVPILVGAVSPENEAMYGELLAKYVDDPKNFFSV 182

Query: 184 SSDFCHWGARFNYQHYDKKHGPIYKSIEALDKMGMDIIEIGDPDSFKRYLSEYDNTICGR 243
           SSDFCHWG+RFNY HYD  HG I+KSIEALDK GMDIIE GDPD+FK+YL E++NTICGR
Sbjct: 183 SSDFCHWGSRFNYMHYDNTHGAIHKSIEALDKKGMDIIETGDPDAFKKYLLEFENTICGR 242

Query: 244 HPISVFLHMLRNCSTKIKIKFLRYEQSSQCQSTRDSSVSYASAAAKID 291
           HPIS+FLHML++ S+KIKI FLRYEQSSQCQ+ RDSSVSYASAAAK++
Sbjct: 243 HPISIFLHMLKHSSSKIKINFLRYEQSSQCQTMRDSSVSYASAAAKLE 290