Miyakogusa Predicted Gene

Lj5g3v0510890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0510890.1 Non Chatacterized Hit- tr|I3T9E4|I3T9E4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,RNase_PH,Exoribonuclease, phosphorolytic domain 1; EXOSOME
COMPLEX EXONUCLEASE RRP42 (RIBOSOMAL RNA ,CUFF.53124.1
         (180 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07750.2 | Symbols:  | 3'-5'-exoribonuclease family protein |...   249   6e-67
AT3G07750.1 | Symbols:  | 3'-5'-exoribonuclease family protein |...   249   6e-67
AT3G12990.3 | Symbols: RRP45a | ribonuclease PH45A | chr3:415634...    82   1e-16
AT3G12990.2 | Symbols: RRP45a | ribonuclease PH45A | chr3:415634...    82   1e-16
AT3G12990.1 | Symbols: RRP45a | ribonuclease PH45A | chr3:415634...    82   1e-16
AT3G60500.3 | Symbols: CER7 | 3'-5'-exoribonuclease family prote...    81   4e-16
AT3G60500.2 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family p...    81   4e-16
AT3G60500.1 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family p...    81   4e-16
AT1G60080.1 | Symbols:  | 3'-5'-exoribonuclease family protein |...    64   8e-11

>AT3G07750.2 | Symbols:  | 3'-5'-exoribonuclease family protein |
           chr3:2473486-2475218 FORWARD LENGTH=286
          Length = 286

 Score =  249 bits (637), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 140/159 (88%)

Query: 2   VGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVK 61
           +GLSLGE+HFI+GGIAQDLR DGRKRLTYRPIYVETGVIPQA+GSAR+R+G T+VIASVK
Sbjct: 1   MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60

Query: 62  AELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXXX 121
           AE+G+PS LQPDKGKV+++IDCS TAEP F GRGG++LS+EL++ALQR            
Sbjct: 61  AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120

Query: 122 IDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIK 160
           I+LSSL++ EGK+CWDLYIDGLV+SSDGNLLDALGAAIK
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIK 159


>AT3G07750.1 | Symbols:  | 3'-5'-exoribonuclease family protein |
           chr3:2473486-2475218 FORWARD LENGTH=286
          Length = 286

 Score =  249 bits (637), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 140/159 (88%)

Query: 2   VGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVK 61
           +GLSLGE+HFI+GGIAQDLR DGRKRLTYRPIYVETGVIPQA+GSAR+R+G T+VIASVK
Sbjct: 1   MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60

Query: 62  AELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXXX 121
           AE+G+PS LQPDKGKV+++IDCS TAEP F GRGG++LS+EL++ALQR            
Sbjct: 61  AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120

Query: 122 IDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIK 160
           I+LSSL++ EGK+CWDLYIDGLV+SSDGNLLDALGAAIK
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIK 159


>AT3G12990.3 | Symbols: RRP45a | ribonuclease PH45A |
           chr3:4156345-4157842 FORWARD LENGTH=307
          Length = 307

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 83/153 (54%), Gaps = 8/153 (5%)

Query: 1   MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV 60
           M  L++ E  F++  +  +LR DGR    YR + ++ G   + +GS+++++G T V+A V
Sbjct: 8   MWRLTVNESKFVESALQSELRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFV 64

Query: 61  KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXX 120
            A+L +P   +P +G  SI+ + S  A+P+FE     + + EL   + R           
Sbjct: 65  TAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDR-----ALRESR 119

Query: 121 XIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLD 153
            +D  SL V+ GK+ W + ID  ++ + GNL+D
Sbjct: 120 AVDTESLCVLAGKLVWSVRIDLHILDNGGNLVD 152


>AT3G12990.2 | Symbols: RRP45a | ribonuclease PH45A |
           chr3:4156345-4157842 FORWARD LENGTH=307
          Length = 307

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 83/153 (54%), Gaps = 8/153 (5%)

Query: 1   MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV 60
           M  L++ E  F++  +  +LR DGR    YR + ++ G   + +GS+++++G T V+A V
Sbjct: 8   MWRLTVNESKFVESALQSELRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFV 64

Query: 61  KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXX 120
            A+L +P   +P +G  SI+ + S  A+P+FE     + + EL   + R           
Sbjct: 65  TAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDR-----ALRESR 119

Query: 121 XIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLD 153
            +D  SL V+ GK+ W + ID  ++ + GNL+D
Sbjct: 120 AVDTESLCVLAGKLVWSVRIDLHILDNGGNLVD 152


>AT3G12990.1 | Symbols: RRP45a | ribonuclease PH45A |
           chr3:4156345-4157842 FORWARD LENGTH=307
          Length = 307

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 83/153 (54%), Gaps = 8/153 (5%)

Query: 1   MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV 60
           M  L++ E  F++  +  +LR DGR    YR + ++ G   + +GS+++++G T V+A V
Sbjct: 8   MWRLTVNESKFVESALQSELRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFV 64

Query: 61  KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXX 120
            A+L +P   +P +G  SI+ + S  A+P+FE     + + EL   + R           
Sbjct: 65  TAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDR-----ALRESR 119

Query: 121 XIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLD 153
            +D  SL V+ GK+ W + ID  ++ + GNL+D
Sbjct: 120 AVDTESLCVLAGKLVWSVRIDLHILDNGGNLVD 152


>AT3G60500.3 | Symbols: CER7 | 3'-5'-exoribonuclease family protein
           | chr3:22354245-22356440 FORWARD LENGTH=438
          Length = 438

 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 86/154 (55%), Gaps = 10/154 (6%)

Query: 1   MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV 60
           M  L++ E  F++  +  +LR DGR    YR + ++ G   + +GS+ +++G T V+  V
Sbjct: 8   MWRLTVNESKFVETALQSELRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFV 64

Query: 61  KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFE-GRGGDDLSAELSVALQRXXXXXXXXXX 119
            A+L +P   +P++G +SI+ + S  A+P+FE GR G+  + EL   + R          
Sbjct: 65  TAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDR-----GLRES 118

Query: 120 XXIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLD 153
             +D  SL V+ GK+ W + ID  ++ + GNL+D
Sbjct: 119 RAVDTESLCVLAGKMVWSVRIDLHILDNGGNLVD 152


>AT3G60500.2 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family
           protein | chr3:22354245-22356440 FORWARD LENGTH=438
          Length = 438

 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 86/154 (55%), Gaps = 10/154 (6%)

Query: 1   MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV 60
           M  L++ E  F++  +  +LR DGR    YR + ++ G   + +GS+ +++G T V+  V
Sbjct: 8   MWRLTVNESKFVETALQSELRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFV 64

Query: 61  KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFE-GRGGDDLSAELSVALQRXXXXXXXXXX 119
            A+L +P   +P++G +SI+ + S  A+P+FE GR G+  + EL   + R          
Sbjct: 65  TAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDR-----GLRES 118

Query: 120 XXIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLD 153
             +D  SL V+ GK+ W + ID  ++ + GNL+D
Sbjct: 119 RAVDTESLCVLAGKMVWSVRIDLHILDNGGNLVD 152


>AT3G60500.1 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family
           protein | chr3:22354245-22356440 FORWARD LENGTH=438
          Length = 438

 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 86/154 (55%), Gaps = 10/154 (6%)

Query: 1   MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV 60
           M  L++ E  F++  +  +LR DGR    YR + ++ G   + +GS+ +++G T V+  V
Sbjct: 8   MWRLTVNESKFVETALQSELRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFV 64

Query: 61  KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFE-GRGGDDLSAELSVALQRXXXXXXXXXX 119
            A+L +P   +P++G +SI+ + S  A+P+FE GR G+  + EL   + R          
Sbjct: 65  TAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDR-----GLRES 118

Query: 120 XXIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLD 153
             +D  SL V+ GK+ W + ID  ++ + GNL+D
Sbjct: 119 RAVDTESLCVLAGKMVWSVRIDLHILDNGGNLVD 152


>AT1G60080.1 | Symbols:  | 3'-5'-exoribonuclease family protein |
           chr1:22152605-22154339 REVERSE LENGTH=302
          Length = 302

 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 13/144 (9%)

Query: 10  HFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAELGKPSL 69
            F +  +++ LR DGR+    R   V  G++  A GSA  ++G+T ++A+++ E+  PS 
Sbjct: 26  RFFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPST 85

Query: 70  LQPDKGKVSIYID----CSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXXXIDLS 125
             PD+G ++I       CS T  P         +S  LS  +              IDL 
Sbjct: 86  DSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTI---------LSSGMIDLK 136

Query: 126 SLIVVEGKICWDLYIDGLVVSSDG 149
            L +V GK  W  Y+D   + +DG
Sbjct: 137 ELCLVSGKAAWMGYLDIYCLDADG 160