Miyakogusa Predicted Gene

Lj5g3v0495880.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0495880.3 Non Chatacterized Hit- tr|I3SNI5|I3SNI5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,88.37,0,CM_pl-yst: chorismate mutase,Chorismate mutase, AroQ
class, eukaryotic type; SUBFAMILY NOT NAMED,NUL,CUFF.53082.3
         (277 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10870.1 | Symbols: ATCM2, CM2 | chorismate mutase 2 | chr5:3...   306   1e-83
AT1G69370.1 | Symbols: CM3, cm-3 | chorismate mutase 3 | chr1:26...   266   1e-71
AT3G29200.1 | Symbols: CM1, ATCM1 | chorismate mutase 1 | chr3:1...   261   4e-70

>AT5G10870.1 | Symbols: ATCM2, CM2 | chorismate mutase 2 |
           chr5:3430691-3432272 REVERSE LENGTH=265
          Length = 265

 Score =  306 bits (784), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 152/252 (60%), Positives = 187/252 (74%), Gaps = 2/252 (0%)

Query: 28  NDVYTLESVREDLVKQEDTIVFGLIDRARFPMNYHTYDENYWKIPGFCGSLVECVVQNTE 87
           ++V +L+ +RE L++QEDTIVF LI+RA+FP+N   ++E+     G   SL E  V+ TE
Sbjct: 14  SNVLSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFEESRCLDSGSFSSLTEFFVRETE 73

Query: 88  AIQAMAGRYQNPEENAFFPEHLPSPIVPSYPFTQILHPGAASININKSIWKNYFDELLPI 147
            IQA  GRY+ PEEN FF E++P  + P++ +   LHP A S+NINK IW  YF ELLP+
Sbjct: 74  IIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQIWDIYFKELLPL 133

Query: 148 LVASGDDGNYAQTAASDLSLLQAISRRIHYGKFVAEAKFRESPQDYEPLIRAKDTEGLMK 207
            V  GDDGNY  TAASDL+ LQA+SRRIHYGKFVAE KFR++PQDYEP IRA+D E LMK
Sbjct: 134 FVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVAEVKFRDAPQDYEPAIRAQDREALMK 193

Query: 208 LLTFESVQEMVIKRVEKKAMVFGQEVGLNS--DDEKEVKRKFDPSVASSLYQKWIIPLTK 265
           LLTFE V+EMV KRV+KKA  FGQEV  NS   DE + K K DP +AS +Y +W+IPLTK
Sbjct: 194 LLTFEKVEEMVKKRVQKKAETFGQEVKFNSGYGDESKKKYKVDPLLASRIYGEWLIPLTK 253

Query: 266 EVEVEYLLRRLD 277
            VEVEYLLRRLD
Sbjct: 254 LVEVEYLLRRLD 265


>AT1G69370.1 | Symbols: CM3, cm-3 | chorismate mutase 3 |
           chr1:26080098-26081559 FORWARD LENGTH=316
          Length = 316

 Score =  266 bits (680), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 131/265 (49%), Positives = 184/265 (69%), Gaps = 3/265 (1%)

Query: 16  STVRYR--MAKAESNDVYTLESVREDLVKQEDTIVFGLIDRARFPMNYHTYDENYWKIPG 73
           S +RY   + + + ++   LES+R  L++QED+I+F L++RA++  N  TYDE+ + + G
Sbjct: 52  SPIRYSRGLLRVDESEYLKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYDEDAFTMEG 111

Query: 74  FCGSLVECVVQNTEAIQAMAGRYQNPEENAFFPEHLPSPIVPSYPFTQILHPGAASININ 133
           F GSLVE +V+ TE + A   RY++P+E+ FFP+ LP PI+P   + Q+LH  A SININ
Sbjct: 112 FQGSLVEFMVRETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININ 171

Query: 134 KSIWKNYFDELLPILVASGDDGNYAQTAASDLSLLQAISRRIHYGKFVAEAKFRESPQDY 193
           K +W  YF  LLP LV  GDDGN    A  D   LQ +S+RIH+GKFVAEAKFRE+P  Y
Sbjct: 172 KKVWNMYFKHLLPRLVKPGDDGNCGSAALCDTMCLQILSKRIHFGKFVAEAKFRENPAAY 231

Query: 194 EPLIRAKDTEGLMKLLTFESVQEMVIKRVEKKAMVFGQEVGLNS-DDEKEVKRKFDPSVA 252
           E  I+ +D   LM+LLT+E+V+E+V KRVE KA +FGQ++ +N  + E +   K  PS+ 
Sbjct: 232 ETAIKEQDRTQLMQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLV 291

Query: 253 SSLYQKWIIPLTKEVEVEYLLRRLD 277
           + LY + I+PLTKEV++EYLLRRLD
Sbjct: 292 AKLYGERIMPLTKEVQIEYLLRRLD 316


>AT3G29200.1 | Symbols: CM1, ATCM1 | chorismate mutase 1 |
           chr3:11164582-11166258 REVERSE LENGTH=340
          Length = 340

 Score =  261 bits (666), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 133/278 (47%), Positives = 187/278 (67%), Gaps = 12/278 (4%)

Query: 9   VVLVLVIS-TVRYRMAKAESNDVYTLESVREDLVKQEDTIVFGLIDRARFPMNYHTYDEN 67
            V+ L  S T + R+ ++ES    TLE +R  L++QED+I+FGL++RA++  N  TYD  
Sbjct: 66  AVMTLAGSLTGKKRVDESES---LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDPT 122

Query: 68  YWKIPGFCGSLVECVVQNTEAIQAMAGRYQNPEENAFFPEHLPSPIVPSYPFTQILHPGA 127
            + + GF GSLVE +V+ TE + A  GR+++P+E+ FFP+ LP P++P   + ++LH  A
Sbjct: 123 AFDMDGFNGSLVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAA 182

Query: 128 ASININKSIWKNYFDELLPILVASGDDGNYAQTAASDLSLLQAISRRIHYGKFVAEAKFR 187
            SININK IW  YF +L+P LV  GDDGNY  TA  D   LQ +S+RIHYGKFVAEAKF+
Sbjct: 183 DSININKKIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVAEAKFQ 242

Query: 188 ESPQDYEPLIRAKDTEGLMKLLTFESVQEMVIKRVEKKAMVFGQEVGLNSDDEKEVKR-- 245
            SP+ YE  I+A+D + LM +LTF +V++ + KRVE K   +GQEV +  ++++E +   
Sbjct: 243 ASPEAYESAIKAQDKDALMDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEG 302

Query: 246 ------KFDPSVASSLYQKWIIPLTKEVEVEYLLRRLD 277
                 K  P +   LY  WI+PLTKEV+VEYLLRRLD
Sbjct: 303 NESHVYKISPILVGDLYGDWIMPLTKEVQVEYLLRRLD 340