Miyakogusa Predicted Gene

Lj5g3v0473750.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0473750.1 tr|A9SQU0|A9SQU0_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,50,6e-17,coiled-coil,NULL,CUFF.53061.1
         (151 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G24970.1 | Symbols:  | unknown protein; Has 33 Blast hits to ...   187   3e-48

>AT2G24970.1 | Symbols:  | unknown protein; Has 33 Blast hits to 33
           proteins in 17 species: Archae - 0; Bacteria - 0;
           Metazoa - 1; Fungi - 0; Plants - 28; Viruses - 0; Other
           Eukaryotes - 4 (source: NCBI BLink). |
           chr2:10620215-10621250 REVERSE LENGTH=152
          Length = 152

 Score =  187 bits (474), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 87/147 (59%), Positives = 115/147 (78%)

Query: 5   YNQATDGLMKLFTKANHDLAMVHHRLEKEFQQVYPDNANPMKLVSRIKKVQEDISTLKGQ 64
           ++QA D L+ +F++A+HDL +VH +L+KEFQQ+YP NANPMKL+ RIKK+QED++ LK Q
Sbjct: 6   HHQAVDNLLNVFSRASHDLTVVHSKLDKEFQQMYPANANPMKLIQRIKKLQEDVTLLKHQ 65

Query: 65  CHELLAAKQDLIDKAQITLVENRNSLQRMQASVGIPVTGEDDAAFTNFKQVIEEWTAQVR 124
           C +LL+AKQDLIDKAQ TLV N N +Q+M AS+G    G+ D A  +F Q+I+EWT QVR
Sbjct: 66  CLDLLSAKQDLIDKAQTTLVGNCNLIQKMNASLGESTNGDTDDALADFNQIIDEWTMQVR 125

Query: 125 SKTGDETHDSDSGDINKLLFSAIVQSN 151
           S+T  ET D+D  DINK+LFSAI  +N
Sbjct: 126 SRTVGETEDADKEDINKMLFSAICHTN 152