Miyakogusa Predicted Gene
- Lj5g3v0433520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0433520.1 Non Chatacterized Hit- tr|B9RQX9|B9RQX9_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,47.79,7e-19,seg,NULL,CUFF.53004.1
(238 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G21940.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 87 1e-17
AT3G43850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 83 1e-16
AT2G24550.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 52 4e-07
AT5G24890.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 49 3e-06
AT4G31510.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 49 4e-06
>AT5G21940.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G43850.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:7249446-7250353 REVERSE LENGTH=264
Length = 264
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 66/108 (61%), Gaps = 7/108 (6%)
Query: 34 IGRNSDVSSERSMXXXXXXXXXXAESAYSGGALNGMEALEEVLPIRRGISKFYNGKSMSF 93
IGRNSD + S ES Y G L ME+LE+VLP+R+GISK+Y+GKS SF
Sbjct: 44 IGRNSDDGEKSSEDGGDDAGENEVESPYKG-PLEMMESLEQVLPVRKGISKYYSGKSKSF 102
Query: 94 TSLA-----DAASSPSLKDIVKPENAYTRRRRNLMAFSHGWDKNRSYP 136
T+L SS S+KD+ KPEN Y+RRRRNL+ W+ N++ P
Sbjct: 103 TNLTAEAASALTSSSSMKDLAKPENPYSRRRRNLLCH-QIWENNKTTP 149
>AT3G43850.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: vacuole; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G21940.1); Has 215 Blast hits to 215 proteins
in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr3:15702085-15704152 REVERSE
LENGTH=270
Length = 270
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 54/67 (80%), Gaps = 2/67 (2%)
Query: 58 ESAYSGGALNGMEALEEVLPIRRGISKFYNGKSMSFTSLADAASSPSLKDIVKPENAYTR 117
ES+Y+G L+ ME+LEE LPI+R ISKFY GKS SF SL++ +S P +KD+ KPEN Y+R
Sbjct: 45 ESSYNG-PLDMMESLEEALPIKRAISKFYKGKSKSFMSLSETSSLP-VKDLTKPENLYSR 102
Query: 118 RRRNLMA 124
RRRNL++
Sbjct: 103 RRRNLLS 109
>AT2G24550.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G31510.1); Has 219 Blast hits to 219 proteins
in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16;
Fungi - 2; Plants - 184; Viruses - 0; Other Eukaryotes -
17 (source: NCBI BLink). | chr2:10428060-10429051
REVERSE LENGTH=245
Length = 245
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 71 ALEEVLPIRRGISKFYNGKSMSFTSLADAASSPSLKDIVKPENAYTRRRRNLMA 124
+LE+ LPI+RG+S Y GKS SF +L +AAS KD+ K EN + +RRR ++A
Sbjct: 100 SLEDSLPIKRGLSNHYVGKSKSFGNLMEAASKA--KDLEKVENPFNKRRRLVIA 151
>AT5G24890.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:8558357-8559172
REVERSE LENGTH=240
Length = 240
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 65 ALNGMEALEEVLPIRRGISKFYNGKSMSFTSLADAASSPSLKDIVKPENAYTRRRR---- 120
L M +LE+ LP +RG+S Y GKS SF +L + S+K++ K EN +RRR
Sbjct: 94 GLASMSSLEDSLPSKRGLSNHYKGKSKSFGNLGEIG---SVKEVAKQENPLNKRRRLQIC 150
Query: 121 NLMAFS--HGWDKNRSYPL 137
N +A + W +S PL
Sbjct: 151 NKLARKSFYSWQNPKSMPL 169
>AT4G31510.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G24550.1); Has 205 Blast hits to 205 proteins
in 31 species: Archae - 0; Bacteria - 0; Metazoa - 5;
Fungi - 3; Plants - 187; Viruses - 0; Other Eukaryotes -
10 (source: NCBI BLink). | chr4:15276328-15277219
REVERSE LENGTH=214
Length = 214
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 57 AESAYSGGALNGMEA-LEEVLPIRRGISKFYNGKSMSFTSLADAASSPSLKDIVKPENAY 115
A S+ G LN + LE+ LPI+RG+S Y GKS SF +L +A+++ D+VK E+
Sbjct: 60 AVSSSQGRWLNSFSSSLEDSLPIKRGLSNHYIGKSKSFGNLMEASNT---NDLVKVESPL 116
Query: 116 TRRRRNLMA 124
+RRR L+A
Sbjct: 117 NKRRRLLIA 125