Miyakogusa Predicted Gene

Lj5g3v0404980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0404980.1 tr|F3E884|F3E884_PSESL Protein phosphatase
2C-like OS=Pseudomonas syringae pv. lachrymans str.
M3013,30.17,7e-19,seg,NULL,CUFF.52952.1
         (270 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11870.2 | Symbols:  | Alkaline phytoceramidase (aPHC) | chr5...   258   3e-69
AT5G11870.1 | Symbols:  | Alkaline phytoceramidase (aPHC) | chr5...   251   3e-67
AT1G71190.1 | Symbols: SAG18 | senescence associated gene 18 | c...   186   2e-47
AT1G71190.2 | Symbols: SAG18 | senescence associated gene 18 | c...   152   2e-37

>AT5G11870.2 | Symbols:  | Alkaline phytoceramidase (aPHC) |
           chr5:3825720-3827363 FORWARD LENGTH=270
          Length = 270

 Score =  258 bits (660), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/265 (48%), Positives = 169/265 (63%), Gaps = 4/265 (1%)

Query: 8   WVPNQRQRLRRWKKTRVLFAAFLCCISFFLF-TPKIP-RSLNHHRFADLRNLLGVPNTLN 65
           W+ NQ+  + RWK+ R+L      C S  +F TPK+P  S  HH FAD RN +GVPNTLN
Sbjct: 3   WLTNQQ--IGRWKRKRILVVGSFLCWSIIMFITPKVPLDSFRHHIFADKRNFMGVPNTLN 60

Query: 66  VITNFPFXXXXXXXXXXXXXXXXFNISSQAEVWAWVLFYAGILGYAFGSTYYHLKPDNNR 125
           V+TNFPF                FNIS   E+W W LFYAGI   AFGS +YHLKPD+NR
Sbjct: 61  VMTNFPFLIVGVLGFVLCIGGSFFNISLNGEIWGWTLFYAGIASLAFGSAFYHLKPDDNR 120

Query: 126 VLWDMLPMMVAYSSLFSSLVVERIGKCIGLCCMCALLLSAFICVIYERLCDDIRLCLMFQ 185
           ++WD LP+++AYSSLFSS +VER G+ +GL C+  LL  + + V Y R+ +D+RLC+ FQ
Sbjct: 121 IVWDTLPILIAYSSLFSSFLVERAGEKVGLSCLILLLFISCLSVAYARVFNDLRLCMTFQ 180

Query: 186 FILPLAIAAVSLVYRSNYTDSRYWLSSIGIYLLGKFVAVVDRKLYRVNNYVISGHSLEHL 245
            I  L I  ++++    YT SR+WL +   Y + K   + D K+Y  N Y+ISGHSLEHL
Sbjct: 181 LIPCLVIPVMAVLLPPKYTHSRFWLWATAAYTIAKIEGLADNKIYNANRYIISGHSLEHL 240

Query: 246 CLALIPFLLGVMLIYREPKLQRLGD 270
           C A+   LL +ML+YR  +  RLGD
Sbjct: 241 CSAVATLLLTIMLLYRSIRFNRLGD 265


>AT5G11870.1 | Symbols:  | Alkaline phytoceramidase (aPHC) |
           chr5:3825720-3827241 FORWARD LENGTH=262
          Length = 262

 Score =  251 bits (642), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 125/262 (47%), Positives = 166/262 (63%), Gaps = 4/262 (1%)

Query: 8   WVPNQRQRLRRWKKTRVLFAAFLCCISFFLF-TPKIP-RSLNHHRFADLRNLLGVPNTLN 65
           W+ NQ+  + RWK+ R+L      C S  +F TPK+P  S  HH FAD RN +GVPNTLN
Sbjct: 3   WLTNQQ--IGRWKRKRILVVGSFLCWSIIMFITPKVPLDSFRHHIFADKRNFMGVPNTLN 60

Query: 66  VITNFPFXXXXXXXXXXXXXXXXFNISSQAEVWAWVLFYAGILGYAFGSTYYHLKPDNNR 125
           V+TNFPF                FNIS   E+W W LFYAGI   AFGS +YHLKPD+NR
Sbjct: 61  VMTNFPFLIVGVLGFVLCIGGSFFNISLNGEIWGWTLFYAGIASLAFGSAFYHLKPDDNR 120

Query: 126 VLWDMLPMMVAYSSLFSSLVVERIGKCIGLCCMCALLLSAFICVIYERLCDDIRLCLMFQ 185
           ++WD LP+++AYSSLFSS +VER G+ +GL C+  LL  + + V Y R+ +D+RLC+ FQ
Sbjct: 121 IVWDTLPILIAYSSLFSSFLVERAGEKVGLSCLILLLFISCLSVAYARVFNDLRLCMTFQ 180

Query: 186 FILPLAIAAVSLVYRSNYTDSRYWLSSIGIYLLGKFVAVVDRKLYRVNNYVISGHSLEHL 245
            I  L I  ++++    YT SR+WL +   Y + K   + D K+Y  N Y+ISGHSLEHL
Sbjct: 181 LIPCLVIPVMAVLLPPKYTHSRFWLWATAAYTIAKIEGLADNKIYNANRYIISGHSLEHL 240

Query: 246 CLALIPFLLGVMLIYREPKLQR 267
           C A+   LL +ML+YR  +  R
Sbjct: 241 CSAVATLLLTIMLLYRSIRFNR 262


>AT1G71190.1 | Symbols: SAG18 | senescence associated gene 18 |
           chr1:26833597-26834982 REVERSE LENGTH=281
          Length = 281

 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/244 (38%), Positives = 141/244 (57%), Gaps = 1/244 (0%)

Query: 27  AAFLCCISFFLFTPKIPRSLNHHRFADLRNLLGVPNTLNVITNFPFXXXXXXXXXX-XXX 85
           +A L  I   + TP IP+S  +H FAD R+ LG+PN LNVI+NFPF              
Sbjct: 11  SAILIFIILMIVTPTIPQSQAYHNFADQRSFLGIPNFLNVISNFPFLIIGLIGLILCFYP 70

Query: 86  XXXFNISSQAEVWAWVLFYAGILGYAFGSTYYHLKPDNNRVLWDMLPMMVAYSSLFSSLV 145
              F+ S + E   W  FY G+   AFGS+YYHL P++  +LWD LPM +A++S+ +  V
Sbjct: 71  EDYFSFSLRGEKIGWTCFYIGVAAVAFGSSYYHLHPNDATLLWDRLPMTIAFTSIMAIFV 130

Query: 146 VERIGKCIGLCCMCALLLSAFICVIYERLCDDIRLCLMFQFILPLAIAAVSLVYRSNYTD 205
           +ERI +  G   +  LLL+  + ++Y R  DD+R   + QF+  + I  ++++    YT 
Sbjct: 131 IERIDEHKGTYSIAPLLLAGLVSILYWRFFDDLRPYALVQFVPCIVIPLMAILLPPMYTH 190

Query: 206 SRYWLSSIGIYLLGKFVAVVDRKLYRVNNYVISGHSLEHLCLALIPFLLGVMLIYREPKL 265
           S YWL + G YLL K     D+ +Y   +++ISGHSL+HLC A++P  L +ML  R  + 
Sbjct: 191 STYWLWAAGFYLLAKVEEAADKPIYSWTHHIISGHSLKHLCAAMVPVFLTLMLAKRTVQT 250

Query: 266 QRLG 269
           +R+ 
Sbjct: 251 ERIS 254


>AT1G71190.2 | Symbols: SAG18 | senescence associated gene 18 |
           chr1:26833597-26834982 REVERSE LENGTH=240
          Length = 240

 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 124/243 (51%), Gaps = 40/243 (16%)

Query: 27  AAFLCCISFFLFTPKIPRSLNHHRFADLRNLLGVPNTLNVITNFPFXXXXXXXXXXXXXX 86
           +A L  I   + TP IP+S  +H FAD R+ LG                           
Sbjct: 11  SAILIFIILMIVTPTIPQSQAYHNFADQRSFLG--------------------------- 43

Query: 87  XXFNISSQAEVWAWVLFYAGILGYAFGSTYYHLKPDNNRVLWDMLPMMVAYSSLFSSLVV 146
                        W  FY G+   AFGS+YYHL P++  +LWD LPM +A++S+ +  V+
Sbjct: 44  -------------WTCFYIGVAAVAFGSSYYHLHPNDATLLWDRLPMTIAFTSIMAIFVI 90

Query: 147 ERIGKCIGLCCMCALLLSAFICVIYERLCDDIRLCLMFQFILPLAIAAVSLVYRSNYTDS 206
           ERI +  G   +  LLL+  + ++Y R  DD+R   + QF+  + I  ++++    YT S
Sbjct: 91  ERIDEHKGTYSIAPLLLAGLVSILYWRFFDDLRPYALVQFVPCIVIPLMAILLPPMYTHS 150

Query: 207 RYWLSSIGIYLLGKFVAVVDRKLYRVNNYVISGHSLEHLCLALIPFLLGVMLIYREPKLQ 266
            YWL + G YLL K     D+ +Y   +++ISGHSL+HLC A++P  L +ML  R  + +
Sbjct: 151 TYWLWAAGFYLLAKVEEAADKPIYSWTHHIISGHSLKHLCAAMVPVFLTLMLAKRTVQTE 210

Query: 267 RLG 269
           R+ 
Sbjct: 211 RIS 213