Miyakogusa Predicted Gene

Lj5g3v0403740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0403740.1 Non Chatacterized Hit- tr|I1M9C2|I1M9C2_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,37.04,8e-19,seg,NULL,CUFF.52931.1
         (253 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60030.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    82   5e-16
AT1G75335.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    71   7e-13

>AT5G60030.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT1G75335.1); Has 1807 Blast hits to 1807
          proteins in 277 species: Archae - 0; Bacteria - 0;
          Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
          Other Eukaryotes - 339 (source: NCBI BLink). |
          chr5:24172082-24172960 REVERSE LENGTH=292
          Length = 292

 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 49/61 (80%)

Query: 1  MKTIYGECLSFKEISLSKATKVISQFASADNGASEVVSAYLHRASASFVELNNLHKELKS 60
          MKT+ G  +S + ISLSKA K++S FAS+DNGAS+ VSAYL RASA+F EL + H+E+KS
Sbjct: 1  MKTVTGRVVSAEPISLSKAAKLLSGFASSDNGASQDVSAYLRRASAAFTELKSFHREIKS 60

Query: 61 K 61
          K
Sbjct: 61 K 61


>AT1G75335.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN:
          cellular_component unknown; BEST Arabidopsis thaliana
          protein match is: unknown protein (TAIR:AT5G60030.1);
          Has 30201 Blast hits to 17322 proteins in 780 species:
          Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
          3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
          2996 (source: NCBI BLink). | chr1:28268576-28268866
          FORWARD LENGTH=96
          Length = 96

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 47/61 (77%)

Query: 1  MKTIYGECLSFKEISLSKATKVISQFASADNGASEVVSAYLHRASASFVELNNLHKELKS 60
          MKT+ G   S K ISLSKA  ++S F S++NGAS+ VSAYL RAS +F+EL ++H+E+KS
Sbjct: 1  MKTVTGRVNSAKPISLSKAATLLSGFVSSENGASQDVSAYLRRASGAFIELKSIHREIKS 60

Query: 61 K 61
          K
Sbjct: 61 K 61