Miyakogusa Predicted Gene

Lj5g3v0391640.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0391640.2 Non Chatacterized Hit- tr|G7IB80|G7IB80_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,69.92,0,DUF1230,Uncharacterised protein family Ycf36;
Q9LYI9_ARATH_Q9LYI9;,Uncharacterised protein family Yc,CUFF.52920.2
         (271 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11840.1 | Symbols:  | Protein of unknown function (DUF1230) ...   280   6e-76
AT5G67370.1 | Symbols:  | Protein of unknown function (DUF1230) ...   144   4e-35

>AT5G11840.1 | Symbols:  | Protein of unknown function (DUF1230) |
           chr5:3813610-3814805 REVERSE LENGTH=265
          Length = 265

 Score =  280 bits (717), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 139/207 (67%), Positives = 164/207 (79%), Gaps = 8/207 (3%)

Query: 67  TQCPVPREQQPVNEYQSLSTSFPFSWAAGDVVEYTSRLAVTGLSFAVFVGLPVALFGSVG 126
           T CPVP EQQP+NEYQSLSTSFPFSWA+GD++EY++RL +TG SFA FVGLPV+ FGS+G
Sbjct: 59  TDCPVPPEQQPINEYQSLSTSFPFSWASGDLIEYSTRLFLTGASFAFFVGLPVSWFGSIG 118

Query: 127 SQSELLKRVLCAACSGVGAVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQVWVKTA 186
            + E +KR+L A+ SG+  VTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQVWVKT 
Sbjct: 119 PEYEPVKRILAASSSGIFVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQVWVKTP 178

Query: 187 EVLARDRLLGSFSVKPVLRRLKVTLVGLATCLLASALILINIDGYQNELNLRS----NEA 242
           EVLARDRLLGSFSVKPVL RLK TLV L   L    +++IN+       + R+     + 
Sbjct: 179 EVLARDRLLGSFSVKPVLARLKNTLVILGLSL----ILVINLGDSPIATSYRTYRDPRDR 234

Query: 243 GVRVIPGVYNDESARSFEPDAFCGEPN 269
               IPG YNDE+AR+FEP+AFCGEP+
Sbjct: 235 SSLPIPGAYNDETARTFEPEAFCGEPS 261


>AT5G67370.1 | Symbols:  | Protein of unknown function (DUF1230) |
           chr5:26877667-26879465 REVERSE LENGTH=327
          Length = 327

 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 102/160 (63%), Gaps = 2/160 (1%)

Query: 67  TQCPVPREQQPVNEYQSLSTSFPFSWAAGDVVEYTSRLAVTGLSFAVFVGLPVALFGSVG 126
           ++  VP +Q+PVNEY SL     +SW      E+  RL    L     +G+PVA   S  
Sbjct: 82  SEIEVPSDQRPVNEYSSLKEGMLYSWGELGPSEFFIRLGGLWLVTFTVLGVPVAA-ASFN 140

Query: 127 SQSELLKRVLCAACSGVGAVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQVWVKTA 186
              E L+ +L A    +  V+L V+R+YLGW+YVG+RLLSA + YEE+GWYDGQ+WVK  
Sbjct: 141 PSREPLRFILAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPP 200

Query: 187 EVLARDRLLGSFSVKPVLRRLKVTLVGLATCLLASALILI 226
           EVLARDRLLGS+ VKPV++ LK TL+G    LL SA +L 
Sbjct: 201 EVLARDRLLGSYKVKPVIKMLKQTLIGTG-ALLVSAFVLF 239