Miyakogusa Predicted Gene

Lj5g3v0391630.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0391630.2 Non Chatacterized Hit- tr|I3S7V1|I3S7V1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.76,0,seg,NULL;
DUF778,Protein of unknown function DUF778; SUBFAMILY NOT NAMED,NULL;
UNCHARACTERIZED,Prote,CUFF.52919.2
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26070.1 | Symbols: RTE1 | Protein of unknown function (DUF77...   289   1e-78
AT3G51040.3 | Symbols: RTH | RTE1-homolog | chr3:18952281-189530...   175   2e-44
AT3G51040.2 | Symbols: RTH | RTE1-homolog | chr3:18952281-189530...   175   2e-44
AT3G51040.1 | Symbols: RTH | RTE1-homolog | chr3:18952281-189530...   175   2e-44

>AT2G26070.1 | Symbols: RTE1 | Protein of unknown function (DUF778)
           | chr2:11105741-11106607 REVERSE LENGTH=250
          Length = 250

 Score =  289 bits (740), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 128/198 (64%), Positives = 162/198 (81%), Gaps = 7/198 (3%)

Query: 7   MELNSSYDIEHSHSTQRI-------QHELWPLDPIDPKKAKFPCCLVWNPLPVVSWLAPF 59
           M+L  SYD+E    +  I       + +LWPL  ID KK+KFPCC+VW PLPVVSWLAPF
Sbjct: 10  MDLKRSYDVEDRVVSVSIPSIIEADEADLWPLPEIDTKKSKFPCCIVWTPLPVVSWLAPF 69

Query: 60  IGHIGICKEDGVVLDFSGSYILSVDDFAFGPVARYLQLDRSQCCFPPNLSAHTCKHGYQH 119
           IGHIG+C+EDGV+LDF+GS  ++VDDFAFGP ARYLQLDR++CC PPN+  HTCK+G++H
Sbjct: 70  IGHIGLCREDGVILDFAGSNFINVDDFAFGPPARYLQLDRTKCCLPPNMGGHTCKYGFKH 129

Query: 120 SEYGTAITWDDALQSSSRYFENKTHNLFTCNCHSFVANCLNRLCYGGSMSWNMVSVGALI 179
           +++GTA TWD+AL SS+R FE+KT+N+FTCNCHSFVANCLNRLCYGGSM WNMV+V  L+
Sbjct: 130 TDFGTARTWDNALSSSTRSFEHKTYNIFTCNCHSFVANCLNRLCYGGSMEWNMVNVAILL 189

Query: 180 LFKGSWVDFRSVIRAFLP 197
           + KG W++  SV+R+FLP
Sbjct: 190 MIKGKWINGSSVVRSFLP 207


>AT3G51040.3 | Symbols: RTH | RTE1-homolog | chr3:18952281-18953060
           REVERSE LENGTH=231
          Length = 231

 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 120/171 (70%), Gaps = 6/171 (3%)

Query: 32  DP--IDPKKAKFPCCLVWNPLPVVSWLAPFIGHIGICKEDGVVLDFSGSYILSVDDFAFG 89
           DP  IDPK+ +FPCC+VW PLP +SWL PFIGH+GIC+EDGV+LDF+G   + VD+FAFG
Sbjct: 18  DPMKIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVILDFAGPNFVCVDNFAFG 77

Query: 90  PVARYLQLDRS-QCCFPPNLSAHTCKHGYQHSE--YGTAITWDDALQSSSRYFENKTHNL 146
            V+RY+Q+++  +     +      +  Y+  E  +    TWDDAL+ S++ +++ ++N+
Sbjct: 78  AVSRYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNI 137

Query: 147 FTCNCHSFVANCLNRLCYGGSMSWNMVSVGALILFKGSWVDFRSVIRAFLP 197
            TCNCHSFVAN LNRL    S  WN+V++  L+LFKG WV+  +++++ LP
Sbjct: 138 LTCNCHSFVANNLNRLSI-KSGGWNVVNLATLVLFKGRWVNKTAIVKSLLP 187


>AT3G51040.2 | Symbols: RTH | RTE1-homolog | chr3:18952281-18953060
           REVERSE LENGTH=231
          Length = 231

 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 120/171 (70%), Gaps = 6/171 (3%)

Query: 32  DP--IDPKKAKFPCCLVWNPLPVVSWLAPFIGHIGICKEDGVVLDFSGSYILSVDDFAFG 89
           DP  IDPK+ +FPCC+VW PLP +SWL PFIGH+GIC+EDGV+LDF+G   + VD+FAFG
Sbjct: 18  DPMKIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVILDFAGPNFVCVDNFAFG 77

Query: 90  PVARYLQLDRS-QCCFPPNLSAHTCKHGYQHSE--YGTAITWDDALQSSSRYFENKTHNL 146
            V+RY+Q+++  +     +      +  Y+  E  +    TWDDAL+ S++ +++ ++N+
Sbjct: 78  AVSRYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNI 137

Query: 147 FTCNCHSFVANCLNRLCYGGSMSWNMVSVGALILFKGSWVDFRSVIRAFLP 197
            TCNCHSFVAN LNRL    S  WN+V++  L+LFKG WV+  +++++ LP
Sbjct: 138 LTCNCHSFVANNLNRLSI-KSGGWNVVNLATLVLFKGRWVNKTAIVKSLLP 187


>AT3G51040.1 | Symbols: RTH | RTE1-homolog | chr3:18952281-18953060
           REVERSE LENGTH=231
          Length = 231

 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 120/171 (70%), Gaps = 6/171 (3%)

Query: 32  DP--IDPKKAKFPCCLVWNPLPVVSWLAPFIGHIGICKEDGVVLDFSGSYILSVDDFAFG 89
           DP  IDPK+ +FPCC+VW PLP +SWL PFIGH+GIC+EDGV+LDF+G   + VD+FAFG
Sbjct: 18  DPMKIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVILDFAGPNFVCVDNFAFG 77

Query: 90  PVARYLQLDRS-QCCFPPNLSAHTCKHGYQHSE--YGTAITWDDALQSSSRYFENKTHNL 146
            V+RY+Q+++  +     +      +  Y+  E  +    TWDDAL+ S++ +++ ++N+
Sbjct: 78  AVSRYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNI 137

Query: 147 FTCNCHSFVANCLNRLCYGGSMSWNMVSVGALILFKGSWVDFRSVIRAFLP 197
            TCNCHSFVAN LNRL    S  WN+V++  L+LFKG WV+  +++++ LP
Sbjct: 138 LTCNCHSFVANNLNRLSI-KSGGWNVVNLATLVLFKGRWVNKTAIVKSLLP 187