Miyakogusa Predicted Gene

Lj5g3v0380130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0380130.1 tr|A9PFA7|A9PFA7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_823661 PE=2
SV=1,55.56,5e-19,POLLEN SPECIFIC PROTEIN SF21,Pollen specific protein
SF21; N-MYC DOWNSTREAM REGULATED,Ndr; Ndr,Ndr,CUFF.52899.1
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56750.1 | Symbols: NDL1 | N-MYC downregulated-like 1 | chr5:...   127   1e-30
AT2G19620.1 | Symbols: NDL3 | N-MYC downregulated-like 3 | chr2:...   121   8e-29
AT2G19620.2 | Symbols: NDL3 | N-MYC downregulated-like 3 | chr2:...   121   9e-29
AT5G11790.1 | Symbols: NDL2 | N-MYC downregulated-like 2 | chr5:...   107   2e-24

>AT5G56750.1 | Symbols: NDL1 | N-MYC downregulated-like 1 |
           chr5:22957986-22960606 FORWARD LENGTH=346
          Length = 346

 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/72 (87%), Positives = 66/72 (91%)

Query: 5   LQVQECGSMVTEEQPHAMLIPIEYFLMGYGLYRSSKMSVSPRSPLSPSCISPELYSPESM 64
           ++VQ CGSMVTEEQPHAMLIP+EYFLMGYGLYR S  S SPRSPLSPSCISPEL SPESM
Sbjct: 273 VEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYRPSLFSESPRSPLSPSCISPELLSPESM 332

Query: 65  GLKLKPIKTRIS 76
           GLKLKPIKTRIS
Sbjct: 333 GLKLKPIKTRIS 344


>AT2G19620.1 | Symbols: NDL3 | N-MYC downregulated-like 3 |
           chr2:8486131-8488651 REVERSE LENGTH=347
          Length = 347

 Score =  121 bits (304), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 65/71 (91%)

Query: 5   LQVQECGSMVTEEQPHAMLIPIEYFLMGYGLYRSSKMSVSPRSPLSPSCISPELYSPESM 64
           ++VQ CGSMVTEEQPHAMLIP+E+F MG+GLYR  ++S SPRSPLSPSCISPEL SPES+
Sbjct: 273 VEVQACGSMVTEEQPHAMLIPMEFFFMGFGLYRPGRVSDSPRSPLSPSCISPELLSPESL 332

Query: 65  GLKLKPIKTRI 75
           GLKLKPIKTR+
Sbjct: 333 GLKLKPIKTRV 343


>AT2G19620.2 | Symbols: NDL3 | N-MYC downregulated-like 3 |
           chr2:8486131-8488002 REVERSE LENGTH=328
          Length = 328

 Score =  121 bits (303), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 65/71 (91%)

Query: 5   LQVQECGSMVTEEQPHAMLIPIEYFLMGYGLYRSSKMSVSPRSPLSPSCISPELYSPESM 64
           ++VQ CGSMVTEEQPHAMLIP+E+F MG+GLYR  ++S SPRSPLSPSCISPEL SPES+
Sbjct: 254 VEVQACGSMVTEEQPHAMLIPMEFFFMGFGLYRPGRVSDSPRSPLSPSCISPELLSPESL 313

Query: 65  GLKLKPIKTRI 75
           GLKLKPIKTR+
Sbjct: 314 GLKLKPIKTRV 324


>AT5G11790.1 | Symbols: NDL2 | N-MYC downregulated-like 2 |
           chr5:3799682-3802496 FORWARD LENGTH=344
          Length = 344

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 66/73 (90%), Gaps = 1/73 (1%)

Query: 5   LQVQECGSMVTEEQPHAMLIPIEYFLMGYGLYRSSKMSVSPRSPLSPSCISPELYSPESM 64
           ++VQ  GS+V+EEQP AM+IP+EYFLMGYGLYR ++ SVSPRSPLSP+ ISPEL SPE+M
Sbjct: 273 VEVQGSGSLVSEEQPQAMIIPMEYFLMGYGLYRPTQ-SVSPRSPLSPTRISPELLSPENM 331

Query: 65  GLKLKPIKTRISM 77
           GLKLKPIKTR+++
Sbjct: 332 GLKLKPIKTRLAL 344