Miyakogusa Predicted Gene
- Lj5g3v0380100.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0380100.1 tr|Q2HTC4|Q2HTC4_MEDTR Conserved oligomeric Golgi
complex component 4, related OS=Medicago
truncatul,84.63,0,COG4,Conserved oligomeric Golgi complex, subunit 4;
coiled-coil,NULL; COG4 transport protein,Conserv,CUFF.52896.1
(449 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G01400.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 636 0.0
AT4G01400.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 634 0.0
>AT4G01400.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167);
Has 465 Blast hits to 425 proteins in 199 species:
Archae - 0; Bacteria - 3; Metazoa - 153; Fungi - 166;
Plants - 45; Viruses - 0; Other Eukaryotes - 98 (source:
NCBI BLink). | chr4:573098-575648 REVERSE LENGTH=738
Length = 738
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/424 (72%), Positives = 359/424 (84%), Gaps = 2/424 (0%)
Query: 26 TSSIDFGKAEAVEYVRSLTDVGAMTRLLHECIAHQRALDTQLDDLLSQRADLDRHLVQLQ 85
+S++ FG EA+EYVRSLTDVGAMTRLLHECIA+QR+LD+ LD LLSQR +LDR+LVQLQ
Sbjct: 16 SSTVKFGTPEALEYVRSLTDVGAMTRLLHECIAYQRSLDSDLDTLLSQRTELDRNLVQLQ 75
Query: 86 RSSDVLDIVKSDSDHMLSNVSSTSDLADSVSRKVRELDLAQSRVRSTLHRIDAVVERGNC 145
RS+++LDIVK+D+DHML NV ST DLAD VS KVRELDLAQSRV TL RIDA+VERGNC
Sbjct: 76 RSAEILDIVKADADHMLGNVRSTCDLADQVSGKVRELDLAQSRVNVTLSRIDAIVERGNC 135
Query: 146 LDGGLRALDEEDYESAARYVQTFLQIDAQFKDSGSDQIQRERLMTAKKQLEGIVRKKLSS 205
++G AL+ EDYESAA++VQ FLQID Q+KDSGSDQ E+L +K+QLEGI +KKL +
Sbjct: 136 IEGVKTALESEDYESAAKFVQRFLQIDLQYKDSGSDQ--SEQLHASKEQLEGIAKKKLLA 193
Query: 206 AVDQRDHNAILRFVRLYTPLGLEEEGLQVYVGYLKKVIGMRSRMEFEQLVESMEHSNSNV 265
A+DQRDH ILRFVRLY+PLG+E EGLQ+YVGYLKKVI +R RME+E +VE ME V
Sbjct: 194 AIDQRDHPTILRFVRLYSPLGMETEGLQLYVGYLKKVIALRGRMEYENVVELMEQGLGQV 253
Query: 266 NFVSCLTSLFKDIVLAIEENSEILSGLCGEDGIVYAICELQEECDSRGSVILNKYMEYRK 325
NFV CLT+LFKDIV+AIEEN EIL GLCGEDG+ YAICELQEECD RGS+IL KYM++RK
Sbjct: 254 NFVGCLTNLFKDIVMAIEENDEILRGLCGEDGVAYAICELQEECDLRGSLILKKYMDFRK 313
Query: 326 LSKLSSEINARNNTMLAVGGGTEGPDPREVEMYLEEILQLMQLGEDYTEFMVSKIRGLAS 385
L+ L+S+IN N + GG +EGPDPREVE+Y+EEIL LMQLGEDYTEFMVSKI+ L S
Sbjct: 314 LAILASDINNSPNLNILPGGASEGPDPREVELYVEEILSLMQLGEDYTEFMVSKIKSLTS 373
Query: 386 VDPELLPRATKAFRSGSFSKVVQDVTGFYVILEGFFMVENVRKAIGIDELVPHSLTTSMV 445
VDPELLP ATKAFR+ SFSK +QDVT +YVILEGFFMVENVRKAI IDE VP SLTTSMV
Sbjct: 374 VDPELLPTATKAFRNKSFSKAIQDVTRYYVILEGFFMVENVRKAIRIDEHVPDSLTTSMV 433
Query: 446 DDGF 449
DD F
Sbjct: 434 DDVF 437
>AT4G01400.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167),
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: Pentatricopeptide
repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has
26268 Blast hits to 8959 proteins in 289 species: Archae
- 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants -
25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI
BLink). | chr4:573098-577243 REVERSE LENGTH=1110
Length = 1110
Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/424 (72%), Positives = 359/424 (84%), Gaps = 2/424 (0%)
Query: 26 TSSIDFGKAEAVEYVRSLTDVGAMTRLLHECIAHQRALDTQLDDLLSQRADLDRHLVQLQ 85
+S++ FG EA+EYVRSLTDVGAMTRLLHECIA+QR+LD+ LD LLSQR +LDR+LVQLQ
Sbjct: 388 SSTVKFGTPEALEYVRSLTDVGAMTRLLHECIAYQRSLDSDLDTLLSQRTELDRNLVQLQ 447
Query: 86 RSSDVLDIVKSDSDHMLSNVSSTSDLADSVSRKVRELDLAQSRVRSTLHRIDAVVERGNC 145
RS+++LDIVK+D+DHML NV ST DLAD VS KVRELDLAQSRV TL RIDA+VERGNC
Sbjct: 448 RSAEILDIVKADADHMLGNVRSTCDLADQVSGKVRELDLAQSRVNVTLSRIDAIVERGNC 507
Query: 146 LDGGLRALDEEDYESAARYVQTFLQIDAQFKDSGSDQIQRERLMTAKKQLEGIVRKKLSS 205
++G AL+ EDYESAA++VQ FLQID Q+KDSGSDQ E+L +K+QLEGI +KKL +
Sbjct: 508 IEGVKTALESEDYESAAKFVQRFLQIDLQYKDSGSDQ--SEQLHASKEQLEGIAKKKLLA 565
Query: 206 AVDQRDHNAILRFVRLYTPLGLEEEGLQVYVGYLKKVIGMRSRMEFEQLVESMEHSNSNV 265
A+DQRDH ILRFVRLY+PLG+E EGLQ+YVGYLKKVI +R RME+E +VE ME V
Sbjct: 566 AIDQRDHPTILRFVRLYSPLGMETEGLQLYVGYLKKVIALRGRMEYENVVELMEQGLGQV 625
Query: 266 NFVSCLTSLFKDIVLAIEENSEILSGLCGEDGIVYAICELQEECDSRGSVILNKYMEYRK 325
NFV CLT+LFKDIV+AIEEN EIL GLCGEDG+ YAICELQEECD RGS+IL KYM++RK
Sbjct: 626 NFVGCLTNLFKDIVMAIEENDEILRGLCGEDGVAYAICELQEECDLRGSLILKKYMDFRK 685
Query: 326 LSKLSSEINARNNTMLAVGGGTEGPDPREVEMYLEEILQLMQLGEDYTEFMVSKIRGLAS 385
L+ L+S+IN N + GG +EGPDPREVE+Y+EEIL LMQLGEDYTEFMVSKI+ L S
Sbjct: 686 LAILASDINNSPNLNILPGGASEGPDPREVELYVEEILSLMQLGEDYTEFMVSKIKSLTS 745
Query: 386 VDPELLPRATKAFRSGSFSKVVQDVTGFYVILEGFFMVENVRKAIGIDELVPHSLTTSMV 445
VDPELLP ATKAFR+ SFSK +QDVT +YVILEGFFMVENVRKAI IDE VP SLTTSMV
Sbjct: 746 VDPELLPTATKAFRNKSFSKAIQDVTRYYVILEGFFMVENVRKAIRIDEHVPDSLTTSMV 805
Query: 446 DDGF 449
DD F
Sbjct: 806 DDVF 809