Miyakogusa Predicted Gene

Lj5g3v0380030.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0380030.1 tr|F2DS31|F2DS31_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,33.73,3e-18,seg,NULL;
BACTERIOCHLOROPHYLL SYNTHASE,NULL; PRENYLTRANSFERASES,NULL; UbiA,UbiA
prenyltransferase fa,CUFF.52894.1
         (245 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11945.1 | Symbols: PDS2, ATHST, HST | homogentisate prenyltr...   271   4e-73
AT3G11945.2 | Symbols: PDS2, ATHST, HST | homogentisate prenyltr...   258   2e-69
AT2G18950.1 | Symbols: HPT1, TPT1, ATHPT, VTE2 | homogentisate p...    74   9e-14

>AT3G11945.1 | Symbols: PDS2, ATHST, HST | homogentisate
           prenyltransferase | chr3:3780041-3782880 REVERSE
           LENGTH=386
          Length = 386

 Score =  271 bits (692), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 150/246 (60%), Positives = 171/246 (69%), Gaps = 4/246 (1%)

Query: 3   MELSSSPTP-LRLHPIIPTWNSLHSVKLPTNPNSSRFILAGFSNHLTS--TRRSCCNPVP 59
           MELS S +P +R   + P + +      P+   + +FI        TS  T R     V 
Sbjct: 1   MELSISQSPRVRFSSLAPRFLAASHHHRPSVHLAGKFISLPRDVRFTSLSTSRMRSKFVS 60

Query: 60  KRHKIPISIRASTEVGAAGSDRPFGNKVLDLKDACWRFLRPHTIRGTALGSFALVARALV 119
             ++  ISIRA ++VGAA SD P  +++   ++ACWRFLRPHTIRGTALGS ALV RAL+
Sbjct: 61  TNYR-KISIRACSQVGAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTALVTRALI 119

Query: 120 ENSNLIKWSLVFKALSGLFALICGNGYIVGINQIYDISIDKVNKPYLPIAAGDLSVSSAW 179
           EN++LIKWSLV KALSGL ALICGNGYIVGINQIYDI IDKVNKPYLPIAAGDLSV SAW
Sbjct: 120 ENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAW 179

Query: 180 LLVIFFAAAGLLIVGLNFGPXXXXXXXXXXXXXXXXXVPPFRMKRFPVAAFLIIATVRGF 239
           LLVIFFA AGLL+VG NFGP                 VPP RMKRFPVAAFLIIATVRGF
Sbjct: 180 LLVIFFAIAGLLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPVAAFLIIATVRGF 239

Query: 240 LPNFGV 245
           L NFGV
Sbjct: 240 LLNFGV 245


>AT3G11945.2 | Symbols: PDS2, ATHST, HST | homogentisate
           prenyltransferase | chr3:3780041-3782880 REVERSE
           LENGTH=393
          Length = 393

 Score =  258 bits (659), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/257 (57%), Positives = 169/257 (65%), Gaps = 19/257 (7%)

Query: 3   MELSSSPTP-LRLHPIIPTWNSLHSVKLPTNPNSSRFILAGFSNHLTS------------ 49
           MELS S +P +R   + P + +      P+   + +FI        TS            
Sbjct: 1   MELSISQSPRVRFSSLAPRFLAASHHHRPSVHLAGKFISLPRDVRFTSLSTSRMRILAVA 60

Query: 50  -TRRSCCNPVPKRHKIPISIRASTEVGAAGSDRPFGNKVLDLKDACWRFLRPHTIRGTAL 108
            T +S C  V   ++IP   +    VGAA SD P  +++   ++ACWRFLRPHTIRGTAL
Sbjct: 61  LTFKSRC--VYVNYEIP---KDQILVGAAESDDPVLDRIARFQNACWRFLRPHTIRGTAL 115

Query: 109 GSFALVARALVENSNLIKWSLVFKALSGLFALICGNGYIVGINQIYDISIDKVNKPYLPI 168
           GS ALV RAL+EN++LIKWSLV KALSGL ALICGNGYIVGINQIYDI IDKVNKPYLPI
Sbjct: 116 GSTALVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPI 175

Query: 169 AAGDLSVSSAWLLVIFFAAAGLLIVGLNFGPXXXXXXXXXXXXXXXXXVPPFRMKRFPVA 228
           AAGDLSV SAWLLVIFFA AGLL+VG NFGP                 VPP RMKRFPVA
Sbjct: 176 AAGDLSVQSAWLLVIFFAIAGLLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPVA 235

Query: 229 AFLIIATVRGFLPNFGV 245
           AFLIIATVRGFL NFGV
Sbjct: 236 AFLIIATVRGFLLNFGV 252


>AT2G18950.1 | Symbols: HPT1, TPT1, ATHPT, VTE2 | homogentisate
           phytyltransferase 1 | chr2:8207491-8210047 FORWARD
           LENGTH=393
          Length = 393

 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 85/183 (46%), Gaps = 5/183 (2%)

Query: 61  RHKIPISIRASTEVGAAGSDRPFGNKVLDLKDACWRFLRPHTIRGTALGSFALVARALVE 120
           +HK    + A+     A           D  DA +RF RPHT+ GT L   + V+   VE
Sbjct: 67  KHKSRFRVNATAGQPEAFDSNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILS-VSFLAVE 125

Query: 121 NSNLIKWSLVFKALSGLFALICGNGYIVGINQIYDISIDKVNKPYLPIAAGDLSVSSAWL 180
             + I   L    L  + A +  N YIVG+NQ+ D+ IDKVNKPYLP+A+G+ SV++   
Sbjct: 126 KVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIA 185

Query: 181 LVIFFAAAGL---LIVGLNFGPXXXXXXXXXXXXXXXXXVPPFRMKRFPVAAFLIIATVR 237
           +V  F+        IVG ++                   +P  R KRF + A + I  VR
Sbjct: 186 IVASFSIMSFWLGWIVG-SWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVR 244

Query: 238 GFL 240
             +
Sbjct: 245 AII 247