Miyakogusa Predicted Gene
- Lj5g3v0370010.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0370010.1 tr|G7J539|G7J539_MEDTR MscS-Like mechanosensitive
ion channel MSCL8 OS=Medicago truncatula
GN=MTR_3g,74.9,0,MS_channel,Mechanosensitive ion channel MscS;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Sm-li,NODE_63428_length_2613_cov_17.577879.path2.1
(494 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G58200.2 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-215524... 593 e-170
AT1G58200.1 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-215524... 593 e-170
AT5G10490.1 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304005... 573 e-164
AT5G10490.3 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304550... 570 e-162
AT5G10490.2 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3303836... 569 e-162
AT4G00290.1 | Symbols: | Mechanosensitive ion channel protein |... 76 6e-14
>AT1G58200.2 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-21552488
REVERSE LENGTH=678
Length = 678
Score = 593 bits (1529), Expect = e-170, Method: Compositional matrix adjust.
Identities = 285/462 (61%), Positives = 355/462 (76%), Gaps = 4/462 (0%)
Query: 33 DRLCFVTINLSPVSLRQNSSAL-LFSGLHAPLKPVPSRCNVLLCRSVLTPAGGFEAPLVK 91
+R+ LS + RQ+ +L L L + PV SRCN +CRS L+P G E P++K
Sbjct: 33 NRVYLTRTGLSSCATRQDVWSLQLLESLSGSIVPVSSRCNAFVCRSALSPGNGNEGPILK 92
Query: 92 AATISLSRSYNAIS-RPILLQLIPALGIIGFAFFGLEPFLRLSRVLFLQDRVDRSWKKSS 150
+ + +R Y+A+ P L++LIPA+GI+ FA +GL P LRL+R + D + +KSS
Sbjct: 93 STAVIFTRVYDALGGNPHLVKLIPAVGILAFATWGLRPLLRLARTTLFEKGNDANSQKSS 152
Query: 151 SRYIMTSYLQPLLLWIGVMLICRDLDPLVLQSETGQIMKQRLLSFVRSLSTVLTFAYCSS 210
++YI+ SYLQPLLLW G +L+CR LDP+VL S GQ +KQRLL F RS+STVL F+ C S
Sbjct: 153 TQYIVVSYLQPLLLWSGAILLCRTLDPIVLPSSAGQAIKQRLLIFARSISTVLAFSCCLS 212
Query: 211 RLIRQAQKFYMDTDDSSDEKNMSIDLIGKAVYTAIWVAAVSLFMELIGFSTQKWLTAGGL 270
L++Q QKF+M+T++ +D +NM GKAVYTA WVAA SLFMEL+GFSTQKWLTAGGL
Sbjct: 213 SLLQQVQKFFMETNNPADTRNMGFSFAGKAVYTAAWVAAASLFMELLGFSTQKWLTAGGL 272
Query: 271 GTVLLSLAGREIFTNFLSSVMIHATRPFVVNERIKTKIKGYEVSGKVEHVGWWSPTLVRG 330
GTVLL+LAGREI TNFLSS+MIHATRPFV+NE I+TKI GYEVSG VE VGWWSPT++RG
Sbjct: 273 GTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIGGYEVSGTVEQVGWWSPTIIRG 332
Query: 331 ADCEAVHIPNHKLSVNVVRNLRMKSHWRIKTHLAISHMDVSKINSIIADMRKVLAKNPQV 390
D EAVHIPNH+ SVN+VRNL K+HWRIKTHLAISH+DVSKIN+I+ADMRKVL+KNPQ+
Sbjct: 333 DDREAVHIPNHQFSVNIVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLSKNPQI 392
Query: 391 EQKKLHRRVFLEDINPENQALMILVSCFVKTSHSEEYLRVKEAILLDLLRVISHHGARLA 450
EQ+K+HRRVFLEDI+PENQAL IL+SCFVKTS EEYL VKEA+LLDLL VI HHGARLA
Sbjct: 393 EQQKIHRRVFLEDIDPENQALRILISCFVKTSRFEEYLCVKEAVLLDLLTVIRHHGARLA 452
Query: 451 TPIRTVIKMYSDVDFEIDPFDDTTFTRSRAKAKRTFPLTDPS 492
TPIRTV +M ++ + + F D F ++A R + L +PS
Sbjct: 453 TPIRTVQRMRNEAEVDTAGFSDIVF--NQAAMNRRYMLIEPS 492
>AT1G58200.1 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-21552488
REVERSE LENGTH=678
Length = 678
Score = 593 bits (1529), Expect = e-170, Method: Compositional matrix adjust.
Identities = 285/462 (61%), Positives = 355/462 (76%), Gaps = 4/462 (0%)
Query: 33 DRLCFVTINLSPVSLRQNSSAL-LFSGLHAPLKPVPSRCNVLLCRSVLTPAGGFEAPLVK 91
+R+ LS + RQ+ +L L L + PV SRCN +CRS L+P G E P++K
Sbjct: 33 NRVYLTRTGLSSCATRQDVWSLQLLESLSGSIVPVSSRCNAFVCRSALSPGNGNEGPILK 92
Query: 92 AATISLSRSYNAIS-RPILLQLIPALGIIGFAFFGLEPFLRLSRVLFLQDRVDRSWKKSS 150
+ + +R Y+A+ P L++LIPA+GI+ FA +GL P LRL+R + D + +KSS
Sbjct: 93 STAVIFTRVYDALGGNPHLVKLIPAVGILAFATWGLRPLLRLARTTLFEKGNDANSQKSS 152
Query: 151 SRYIMTSYLQPLLLWIGVMLICRDLDPLVLQSETGQIMKQRLLSFVRSLSTVLTFAYCSS 210
++YI+ SYLQPLLLW G +L+CR LDP+VL S GQ +KQRLL F RS+STVL F+ C S
Sbjct: 153 TQYIVVSYLQPLLLWSGAILLCRTLDPIVLPSSAGQAIKQRLLIFARSISTVLAFSCCLS 212
Query: 211 RLIRQAQKFYMDTDDSSDEKNMSIDLIGKAVYTAIWVAAVSLFMELIGFSTQKWLTAGGL 270
L++Q QKF+M+T++ +D +NM GKAVYTA WVAA SLFMEL+GFSTQKWLTAGGL
Sbjct: 213 SLLQQVQKFFMETNNPADTRNMGFSFAGKAVYTAAWVAAASLFMELLGFSTQKWLTAGGL 272
Query: 271 GTVLLSLAGREIFTNFLSSVMIHATRPFVVNERIKTKIKGYEVSGKVEHVGWWSPTLVRG 330
GTVLL+LAGREI TNFLSS+MIHATRPFV+NE I+TKI GYEVSG VE VGWWSPT++RG
Sbjct: 273 GTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIGGYEVSGTVEQVGWWSPTIIRG 332
Query: 331 ADCEAVHIPNHKLSVNVVRNLRMKSHWRIKTHLAISHMDVSKINSIIADMRKVLAKNPQV 390
D EAVHIPNH+ SVN+VRNL K+HWRIKTHLAISH+DVSKIN+I+ADMRKVL+KNPQ+
Sbjct: 333 DDREAVHIPNHQFSVNIVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLSKNPQI 392
Query: 391 EQKKLHRRVFLEDINPENQALMILVSCFVKTSHSEEYLRVKEAILLDLLRVISHHGARLA 450
EQ+K+HRRVFLEDI+PENQAL IL+SCFVKTS EEYL VKEA+LLDLL VI HHGARLA
Sbjct: 393 EQQKIHRRVFLEDIDPENQALRILISCFVKTSRFEEYLCVKEAVLLDLLTVIRHHGARLA 452
Query: 451 TPIRTVIKMYSDVDFEIDPFDDTTFTRSRAKAKRTFPLTDPS 492
TPIRTV +M ++ + + F D F ++A R + L +PS
Sbjct: 453 TPIRTVQRMRNEAEVDTAGFSDIVF--NQAAMNRRYMLIEPS 492
>AT5G10490.1 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304005
REVERSE LENGTH=673
Length = 673
Score = 573 bits (1477), Expect = e-164, Method: Compositional matrix adjust.
Identities = 291/501 (58%), Positives = 367/501 (73%), Gaps = 20/501 (3%)
Query: 1 MAYLGSMGLSHGVRLLYTSDRKCSFCQRPLPGD-----RLCFVTINLS---PVSLRQNSS 52
MA G++ LSH + L R FC P + RL LS P+ S+
Sbjct: 1 MALYGTLQLSHSLGLC----RNQRFCN---PENSAMRRRLHISNGPLSLGVPLGQHGFSN 53
Query: 53 ALLFSGLHAPLKPVPSRCNVLLCRSVLTPAGGFEAPLVKAATISLSRSYNAISR-PILLQ 111
LL + L P+ VP R C S + +G P VKA T+ L++S+ + + P + +
Sbjct: 54 ILLSNYLRRPICSVPCRTTAFRCHS-FSASGKAIEPAVKAVTVVLTKSHGLMQQFPFVYK 112
Query: 112 LIPALGIIGFAFFGLEPFLRLSRVLFLQDRVDRSWKKSSSRYIMTSYLQPLLLWIGVMLI 171
L+PA+ ++ F+ +GL PF R R + L ++ D WKKS + ++MTSY+QPLLLW+G + I
Sbjct: 113 LVPAVALLVFSLWGLVPFARQGRNILL-NKNDNGWKKSGTYHVMTSYVQPLLLWLGALFI 171
Query: 172 CRDLDPLVLQSETGQIMKQRLLSFVRSLSTVLTFAYCSSRLIRQAQKFYMDTDDSSDEKN 231
CR LDP+VL +E +I+K RLL+FVRSLSTVL FAYC S LI+Q QK + +T + SD +N
Sbjct: 172 CRALDPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSETSNPSDTRN 231
Query: 232 MSIDLIGKAVYTAIWVAAVSLFMELIGFSTQKWLTAGGLGTVLLSLAGREIFTNFLSSVM 291
M GKA+Y+A+WVAAVSLFMEL+GFSTQKWLTAGGLGTVL++LAGREI TNFLSSVM
Sbjct: 232 MGFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVM 291
Query: 292 IHATRPFVVNERIKTKIKGYEVSGKVEHVGWWSPTLVRGADCEAVHIPNHKLSVNVVRNL 351
IHATRPFV+NE I+TKI+GYEVSG VEHVGWWSPT++RG D EA+HIPNHK +VNVVRNL
Sbjct: 292 IHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNL 351
Query: 352 RMKSHWRIKTHLAISHMDVSKINSIIADMRKVLAKNPQVEQKKLHRRVFLEDINPENQAL 411
K+HWRIKTHLAISH+DV+KIN+I+ADMRKVLAKNP VEQ++LHRRVFLE++ PENQAL
Sbjct: 352 TQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQAL 411
Query: 412 MILVSCFVKTSHSEEYLRVKEAILLDLLRVISHHGARLATPIRTVIKMYSDVDFEIDPFD 471
IL+SCFVKTSH EEYL VKEAILLDLLRVISHH ARLATPIRT+ KMY++ D E PF
Sbjct: 412 SILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFG 471
Query: 472 DTTFTRSRAKAKRTFPLTDPS 492
++ + ++R L +P+
Sbjct: 472 ESMY--GGVTSRRPLMLIEPA 490
>AT5G10490.3 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304550
REVERSE LENGTH=671
Length = 671
Score = 570 bits (1468), Expect = e-162, Method: Compositional matrix adjust.
Identities = 276/450 (61%), Positives = 348/450 (77%), Gaps = 5/450 (1%)
Query: 44 PVSLRQNSSALLFSGLHAPLKPVPSRCNVLLCRSVLTPAGGFEAPLVKAATISLSRSYNA 103
P+ S+ LL + L P+ VP R C S + +G P VKA T+ L++S+
Sbjct: 43 PLGQHGFSNILLSNYLRRPICSVPCRTTAFRCHS-FSASGKAIEPAVKAVTVVLTKSHGL 101
Query: 104 ISR-PILLQLIPALGIIGFAFFGLEPFLRLSRVLFLQDRVDRSWKKSSSRYIMTSYLQPL 162
+ + P + +L+PA+ ++ F+ +GL PF R R + L ++ D WKKS + ++MTSY+QPL
Sbjct: 102 MQQFPFVYKLVPAVALLVFSLWGLVPFARQGRNILL-NKNDNGWKKSGTYHVMTSYVQPL 160
Query: 163 LLWIGVMLICRDLDPLVLQSETGQIMKQRLLSFVRSLSTVLTFAYCSSRLIRQAQKFYMD 222
LLW+G + ICR LDP+VL +E +I+K RLL+FVRSLSTVL FAYC S LI+Q QK + +
Sbjct: 161 LLWLGALFICRALDPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSE 220
Query: 223 TDDSSDEKNMSIDLIGKAVYTAIWVAAVSLFMELIGFSTQKWLTAGGLGTVLLSLAGREI 282
T + SD +NM GKA+Y+A+WVAAVSLFMEL+GFSTQKWLTAGGLGTVL++LAGREI
Sbjct: 221 TSNPSDTRNMGFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREI 280
Query: 283 FTNFLSSVMIHATRPFVVNERIKTKIKGYEVSGKVEHVGWWSPTLVRGADCEAVHIPNHK 342
TNFLSSVMIHATRPFV+NE I+TKI+GYEVSG VEHVGWWSPT++RG D EA+HIPNHK
Sbjct: 281 LTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHK 340
Query: 343 LSVNVVRNLRMKSHWRIKTHLAISHMDVSKINSIIADMRKVLAKNPQVEQKKLHRRVFLE 402
+VNVVRNL K+HWRIKTHLAISH+DV+KIN+I+ADMRKVLAKNP VEQ++LHRRVFLE
Sbjct: 341 FTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLE 400
Query: 403 DINPENQALMILVSCFVKTSHSEEYLRVKEAILLDLLRVISHHGARLATPIRTVIKMYSD 462
++ PENQAL IL+SCFVKTSH EEYL VKEAILLDLLRVISHH ARLATPIRT+ KMY++
Sbjct: 401 NVIPENQALSILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTE 460
Query: 463 VDFEIDPFDDTTFTRSRAKAKRTFPLTDPS 492
D E PF ++ + ++R L +P+
Sbjct: 461 TDVENTPFGESMY--GGVTSRRPLMLIEPA 488
>AT5G10490.2 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3303836
REVERSE LENGTH=645
Length = 645
Score = 569 bits (1467), Expect = e-162, Method: Compositional matrix adjust.
Identities = 276/450 (61%), Positives = 348/450 (77%), Gaps = 5/450 (1%)
Query: 44 PVSLRQNSSALLFSGLHAPLKPVPSRCNVLLCRSVLTPAGGFEAPLVKAATISLSRSYNA 103
P+ S+ LL + L P+ VP R C S + +G P VKA T+ L++S+
Sbjct: 17 PLGQHGFSNILLSNYLRRPICSVPCRTTAFRCHS-FSASGKAIEPAVKAVTVVLTKSHGL 75
Query: 104 ISR-PILLQLIPALGIIGFAFFGLEPFLRLSRVLFLQDRVDRSWKKSSSRYIMTSYLQPL 162
+ + P + +L+PA+ ++ F+ +GL PF R R + L ++ D WKKS + ++MTSY+QPL
Sbjct: 76 MQQFPFVYKLVPAVALLVFSLWGLVPFARQGRNILL-NKNDNGWKKSGTYHVMTSYVQPL 134
Query: 163 LLWIGVMLICRDLDPLVLQSETGQIMKQRLLSFVRSLSTVLTFAYCSSRLIRQAQKFYMD 222
LLW+G + ICR LDP+VL +E +I+K RLL+FVRSLSTVL FAYC S LI+Q QK + +
Sbjct: 135 LLWLGALFICRALDPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSE 194
Query: 223 TDDSSDEKNMSIDLIGKAVYTAIWVAAVSLFMELIGFSTQKWLTAGGLGTVLLSLAGREI 282
T + SD +NM GKA+Y+A+WVAAVSLFMEL+GFSTQKWLTAGGLGTVL++LAGREI
Sbjct: 195 TSNPSDTRNMGFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREI 254
Query: 283 FTNFLSSVMIHATRPFVVNERIKTKIKGYEVSGKVEHVGWWSPTLVRGADCEAVHIPNHK 342
TNFLSSVMIHATRPFV+NE I+TKI+GYEVSG VEHVGWWSPT++RG D EA+HIPNHK
Sbjct: 255 LTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHK 314
Query: 343 LSVNVVRNLRMKSHWRIKTHLAISHMDVSKINSIIADMRKVLAKNPQVEQKKLHRRVFLE 402
+VNVVRNL K+HWRIKTHLAISH+DV+KIN+I+ADMRKVLAKNP VEQ++LHRRVFLE
Sbjct: 315 FTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLE 374
Query: 403 DINPENQALMILVSCFVKTSHSEEYLRVKEAILLDLLRVISHHGARLATPIRTVIKMYSD 462
++ PENQAL IL+SCFVKTSH EEYL VKEAILLDLLRVISHH ARLATPIRT+ KMY++
Sbjct: 375 NVIPENQALSILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTE 434
Query: 463 VDFEIDPFDDTTFTRSRAKAKRTFPLTDPS 492
D E PF ++ + ++R L +P+
Sbjct: 435 TDVENTPFGESMY--GGVTSRRPLMLIEPA 462
>AT4G00290.1 | Symbols: | Mechanosensitive ion channel protein |
chr4:123097-125300 REVERSE LENGTH=497
Length = 497
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 12/224 (5%)
Query: 229 EKNMSIDLIGKAVYTAIWVAAVSLFMELIGFSTQKWLTAGGLGTVLLSLAGREIFTNFLS 288
EK +++D + AI + A + E G + Q LT GG+G V + A R+I N LS
Sbjct: 278 EKVLTLDKVSSVGLFAIGLMASA---EACGVAVQSILTVGGVGGVATAFAARDILGNVLS 334
Query: 289 SVMIHATRPFVVNERIKTKIKGYEVSGKVEHVGWWSPTLVRGADCEAVHIPNHKLSVNVV 348
+ + +RPF + + IK V G+V +G + +L+ A+ V +PN S V+
Sbjct: 335 GLSMQFSRPFSMGDTIKAG----SVEGQVIEMGLTTTSLLN-AEKFPVLVPNSLFSSQVI 389
Query: 349 RNLRMKSHWR-IKTHLAISHMDVSKINSIIADMRKVLAKNPQVEQKKLHRRVFLEDINPE 407
N + ++ WR I + + + D+ I I +++++L N +V K +L + E
Sbjct: 390 VN-KSRAQWRAIASKIPLQIDDLDMIPQISNEIKEMLRSNTKVFLGKEAPHCYLSRV--E 446
Query: 408 NQALMILVSCFVKTSHSEEYLRVKEAILLDLLRVISHHGARLAT 451
+ + C + EE ++ +LL+ +++I HG L T
Sbjct: 447 KSFAELTIGCNLIRMGKEELYNTQQEVLLEAVKIIKKHGVSLGT 490