Miyakogusa Predicted Gene

Lj5g3v0348750.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0348750.2 tr|D2A4K5|D2A4K5_TRICA Egalitarian OS=Tribolium
castaneum GN=egl PE=4 SV=1,32.54,9e-19,DNA_pol_A_exo1,3'-5'
exonuclease domain; KH_1,K Homology domain, type 1; no
description,NULL; seg,NU,CUFF.52893.2
         (332 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25910.1 | Symbols:  | 3'-5' exonuclease domain-containing pr...   470   e-133
AT2G25910.2 | Symbols:  | 3'-5' exonuclease domain-containing pr...   466   e-131
AT1G54440.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    53   3e-07
AT2G32415.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    53   3e-07
AT1G54440.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...    53   3e-07
AT2G32415.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...    53   3e-07
AT5G35910.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    50   2e-06

>AT2G25910.1 | Symbols:  | 3'-5' exonuclease domain-containing
           protein / K homology domain-containing protein / KH
           domain-containing protein | chr2:11049379-11051997
           REVERSE LENGTH=341
          Length = 341

 Score =  470 bits (1210), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/312 (73%), Positives = 267/312 (85%), Gaps = 8/312 (2%)

Query: 15  FTHIPHPGEK-----VLDDDESRVPIHIVTAASQLPVEFLEPSPEKKLVIGFDCEGVDLC 69
             H+P P E        + +E  VPI+IVT   QLP +FL PSPEKKLVIGFDCEGVDLC
Sbjct: 9   LAHVPIPPEPGGRSPTQEANEPPVPIYIVTDPFQLPADFLNPSPEKKLVIGFDCEGVDLC 68

Query: 70  RNGELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFG 129
           R+G+LCIMQ+AF +AIYLVD I+GG+V+M+ACKPALES++ITKVIHDCKRDSEALYFQFG
Sbjct: 69  RHGKLCIMQIAFSNAIYLVDVIEGGEVIMKACKPALESNYITKVIHDCKRDSEALYFQFG 128

Query: 130 IKLNNVVDTQIAYSLIEEQEGRKT--DEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDP 187
           I+L+NVVDTQIAYSLIEEQEGR+   D+YISFV LLADPRYCG SY EKEEVRVL+RQDP
Sbjct: 129 IRLHNVVDTQIAYSLIEEQEGRRRPLDDYISFVSLLADPRYCGISYEEKEEVRVLMRQDP 188

Query: 188 KFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERSLWYLAVRGALYCRCF-CVNSND 246
           KFW YRP++ELM+R AADDVRFLLY+YH+MM KLN+RSLW+LAVRGALYCRC  C+N  D
Sbjct: 189 KFWTYRPMTELMIRAAADDVRFLLYLYHKMMGKLNQRSLWHLAVRGALYCRCLCCMNDAD 248

Query: 247 YADWPSLPPIPDKLKADGNGPEEEILSVLDIPHGKMGCVIGKKGATILYIKESCNAEIQI 306
           +ADWP++PPIPD LK++    EEEILSVLD+P GKMG VIG+KGA+IL IKE+CNAEI I
Sbjct: 249 FADWPTVPPIPDNLKSEDQCLEEEILSVLDVPPGKMGRVIGRKGASILAIKEACNAEILI 308

Query: 307 GGAKGPPDKVCI 318
           GGAKGPPDK+ +
Sbjct: 309 GGAKGPPDKIFV 320


>AT2G25910.2 | Symbols:  | 3'-5' exonuclease domain-containing
           protein / K homology domain-containing protein / KH
           domain-containing protein | chr2:11049379-11051997
           REVERSE LENGTH=342
          Length = 342

 Score =  466 bits (1199), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/313 (72%), Positives = 267/313 (85%), Gaps = 9/313 (2%)

Query: 15  FTHIPHPGEK-----VLDDDESRVPIHIVTAASQLPVEFLEPSPEKKLVIGFDCEGVDLC 69
             H+P P E        + +E  VPI+IVT   QLP +FL PSPEKKLVIGFDCEGVDLC
Sbjct: 9   LAHVPIPPEPGGRSPTQEANEPPVPIYIVTDPFQLPADFLNPSPEKKLVIGFDCEGVDLC 68

Query: 70  RNGELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFG 129
           R+G+LCIMQ+AF +AIYLVD I+GG+V+M+ACKPALES++ITKVIHDCKRDSEALYFQFG
Sbjct: 69  RHGKLCIMQIAFSNAIYLVDVIEGGEVIMKACKPALESNYITKVIHDCKRDSEALYFQFG 128

Query: 130 IKLNNVVDTQIAYSLIEEQEGRKT--DEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDP 187
           I+L+NVVDTQIAYSLIEEQEGR+   D+YISFV LLADPRYCG SY EKEEVRVL+RQDP
Sbjct: 129 IRLHNVVDTQIAYSLIEEQEGRRRPLDDYISFVSLLADPRYCGISYEEKEEVRVLMRQDP 188

Query: 188 KFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERSLWYLAVRGALYCRCF-CVNSND 246
           KFW YRP++ELM+R AADDVRFLLY+YH+MM KLN+RSLW+LAVRGALYCRC  C+N  D
Sbjct: 189 KFWTYRPMTELMIRAAADDVRFLLYLYHKMMGKLNQRSLWHLAVRGALYCRCLCCMNDAD 248

Query: 247 YADWPSLPPIPDKLKADGNGPEEEILSVLDIPHGKMGCVIGKKGATILYIKESCN-AEIQ 305
           +ADWP++PPIPD LK++    EEEILSVLD+P GKMG VIG+KGA+IL IKE+CN AEI 
Sbjct: 249 FADWPTVPPIPDNLKSEDQCLEEEILSVLDVPPGKMGRVIGRKGASILAIKEACNSAEIL 308

Query: 306 IGGAKGPPDKVCI 318
           IGGAKGPPDK+ +
Sbjct: 309 IGGAKGPPDKIFV 321


>AT1G54440.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr1:20323284-20327931
           FORWARD LENGTH=637
          Length = 637

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 27/166 (16%)

Query: 65  GVDLCRN------GELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCK 118
            VDL  N      G  C+MQ++     Y+VD  +  D +    +   +     KVIH   
Sbjct: 138 AVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGAD 197

Query: 119 RDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKTDEYI--SFVGLLADPRYCGTSYLEK 176
           RD   L   FGI + N+ DT  A  +++ +  R + E++   + G+ A+  Y        
Sbjct: 198 RDIIWLQRDFGIYVCNLFDTGQASRVLKLE--RNSLEFLLKHYCGVAANKEYQKAD---- 251

Query: 177 EEVRVLLRQDPKFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLN 222
                        W+ RPL ++M R A +D  +LLYIY  M  +L+
Sbjct: 252 -------------WRIRPLPDVMKRYAREDTHYLLYIYDVMRMELH 284


>AT2G32415.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr2:13761307-13765421
           REVERSE LENGTH=891
          Length = 891

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 18/152 (11%)

Query: 72  GELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFGIK 131
           G   ++Q++  +  +LVD I   DV M   +P     +I KV H    D   L   F I 
Sbjct: 155 GFTALIQISTHEEDFLVDTIALHDV-MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIY 213

Query: 132 LNNVVDTQIAYSLIEEQEGRKTDEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDPKFWK 191
           + N+ DT  A  ++ + +        S   LL     CG +       ++L R+D   W+
Sbjct: 214 VVNMFDTAKACEVLSKPQR-------SLAYLLET--VCGVA-----TNKLLQRED---WR 256

Query: 192 YRPLSELMVRTAADDVRFLLYIYHQMMEKLNE 223
            RPLSE MVR A  D  +LLYI   +  +L +
Sbjct: 257 QRPLSEEMVRYARTDAHYLLYIADSLTTELKQ 288


>AT1G54440.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr1:20323284-20327931
           FORWARD LENGTH=639
          Length = 639

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 27/166 (16%)

Query: 65  GVDLCRN------GELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCK 118
            VDL  N      G  C+MQ++     Y+VD  +  D +    +   +     KVIH   
Sbjct: 138 AVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGAD 197

Query: 119 RDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKTDEYI--SFVGLLADPRYCGTSYLEK 176
           RD   L   FGI + N+ DT  A  +++ +  R + E++   + G+ A+  Y        
Sbjct: 198 RDIIWLQRDFGIYVCNLFDTGQASRVLKLE--RNSLEFLLKHYCGVAANKEYQKAD---- 251

Query: 177 EEVRVLLRQDPKFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLN 222
                        W+ RPL ++M R A +D  +LLYIY  M  +L+
Sbjct: 252 -------------WRIRPLPDVMKRYAREDTHYLLYIYDVMRMELH 284


>AT2G32415.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr2:13761386-13765421
           REVERSE LENGTH=872
          Length = 872

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 18/152 (11%)

Query: 72  GELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFGIK 131
           G   ++Q++  +  +LVD I   DV M   +P     +I KV H    D   L   F I 
Sbjct: 155 GFTALIQISTHEEDFLVDTIALHDV-MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIY 213

Query: 132 LNNVVDTQIAYSLIEEQEGRKTDEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDPKFWK 191
           + N+ DT  A  ++ + +        S   LL     CG +       ++L R+D   W+
Sbjct: 214 VVNMFDTAKACEVLSKPQR-------SLAYLLET--VCGVA-----TNKLLQRED---WR 256

Query: 192 YRPLSELMVRTAADDVRFLLYIYHQMMEKLNE 223
            RPLSE MVR A  D  +LLYI   +  +L +
Sbjct: 257 QRPLSEEMVRYARTDAHYLLYIADSLTTELKQ 288


>AT5G35910.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr5:14029871-14035405
           REVERSE LENGTH=870
          Length = 870

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 27/158 (17%)

Query: 65  GVDLCRN------GELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCK 118
            VDL  N      G  C+MQ++     Y+VD  +    +    +   +     KV+H   
Sbjct: 283 AVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGAD 342

Query: 119 RDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKTDEYI--SFVGLLADPRYCGTSYLEK 176
           RD   L   FGI + N+ DT  A  ++  +  R + E++   F G+ A+  Y        
Sbjct: 343 RDIIWLQRDFGIYVCNLFDTGQASRVLNLE--RNSLEFLLQHFCGVTANKEYQNAD---- 396

Query: 177 EEVRVLLRQDPKFWKYRPLSELMVRTAADDVRFLLYIY 214
                        W+ RPL E M R A +D  +LLYIY
Sbjct: 397 -------------WRIRPLPEEMTRYAREDTHYLLYIY 421