Miyakogusa Predicted Gene
- Lj5g3v0324520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0324520.1 tr|H6VM87|H6VM87_BRANA Growth-regulating factor 2
OS=Brassica napus GN=GRF2a1 PE=2 SV=1,40.96,0.0000000000004,seg,NULL;
FAMILY NOT NAMED,NULL; no description,Glutamine-Leucine-Glutamine,
QLQ; WRC,WRC; QLQ,Gluta,CUFF.52873.1
(630 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G22840.1 | Symbols: AtGRF1, GRF1 | growth-regulating factor 1... 288 8e-78
AT4G37740.1 | Symbols: AtGRF2, GRF2 | growth-regulating factor 2... 269 5e-72
AT3G13960.1 | Symbols: AtGRF5, GRF5 | growth-regulating factor 5... 150 3e-36
AT2G36400.1 | Symbols: AtGRF3, GRF3 | growth-regulating factor 3... 127 2e-29
AT2G06200.1 | Symbols: AtGRF6, GRF6 | growth-regulating factor 6... 125 7e-29
AT3G52910.1 | Symbols: AtGRF4, GRF4 | growth-regulating factor 4... 123 3e-28
AT4G24150.1 | Symbols: AtGRF8, GRF8 | growth-regulating factor 8... 108 1e-23
AT5G53660.1 | Symbols: AtGRF7, GRF7 | growth-regulating factor 7... 106 4e-23
AT2G45480.1 | Symbols: AtGRF9, GRF9 | growth-regulating factor 9... 93 5e-19
>AT2G22840.1 | Symbols: AtGRF1, GRF1 | growth-regulating factor 1 |
chr2:9728841-9731141 FORWARD LENGTH=530
Length = 530
Score = 288 bits (737), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 224/586 (38%), Positives = 276/586 (47%), Gaps = 137/586 (23%)
Query: 33 GSGFL-KQERSATTEDDDLRSSKLAKTNNDDKAMXXXXXXXXXXXXXXXXXXXXATLFSD 91
GSGF KQERS +D RSSKL++T+ D +T +D
Sbjct: 22 GSGFSNKQERSGFDGEDCWRSSKLSRTSTD--GFSSSPASAKTLSFHQGIPLLRSTTIND 79
Query: 92 GHH-QQHMLSFSSPKLETYSLDKNNPNATXXXXXXXXXXXXRNTGYSSG------SMHG- 143
Q+HMLSFSS A+ RN+GY G +MHG
Sbjct: 80 PRKGQEHMLSFSS--------------ASGKSDVSPYLQYCRNSGYGLGGMMNTSNMHGN 125
Query: 144 AFAGTRGPFTPSQWMELEHQALIYKYITANVPVPSHLLIPIKKALESAGFCNFSTGILRP 203
G +GPF+ +QW ELE QALIYKYITANVPVPS LL+ +KK+ F G L P
Sbjct: 126 LLTGVKGPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKKSF-------FPYGSLPP 178
Query: 204 NALAWGGFHLGFSN-NTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPV 262
N+ WG FHLGFS N DPEPGRCRRTDGKKWRCSRDAV DQKYCERH+NRGRHRSRKPV
Sbjct: 179 NSFGWGSFHLGFSGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPV 238
Query: 263 EGQSGHAVXXXXXXXXXXXXXXPNGLKLNASSIVVPGNSACNNLTFANQEHKNMQNPLSA 322
EGQ+GH K A + V + NN
Sbjct: 239 EGQNGHNTNAAAAASAAAASTAAAVSKAAAGTSAVAMRGSDNN----------------- 281
Query: 323 DNTSASNTINRMFMNCKENDKASERMQDGPVLPMLPPTLELK-----PKENNNPFMIQKP 377
N+ A+ + N + D + R+Q+ + P T+ L+ PK++NNPF
Sbjct: 282 -NSLAAAVGTQHHTNNQSTDSLANRVQNSRGASVFPATMNLQSKETHPKQSNNPF----- 335
Query: 378 DFPYEEPSRNSEFGFVTSDSLLNPXXXXXXXXXXXXXXXXXXXXXQQNTGSQHPLRHFID 437
EFG ++SDSLLNP Q ++H H
Sbjct: 336 -----------EFGLISSDSLLNPSHKQASYATSSKGFGSYLDFGNQ---AKHAGNHNNV 381
Query: 438 DCPKSQSDXXXXXXXXXRSGVSWTELDHMQSDRTQLSISTPITSSDHFLSFNSSPSNEKL 497
D SW E ++SD TQLS+S P+ SSP +KL
Sbjct: 382 D--------------------SWPE--ELKSDWTQLSMSIPMAP--------SSPVQDKL 411
Query: 498 TLSPLRLSRELDP-IQMGLGVGSAAINESNNTTTTRQATNWIPITW--ESSMGGPLGEVL 554
LSPLRLSRE DP I MGLGV + ++ ++ NWIPI+W +SMGGPLGEVL
Sbjct: 412 ALSPLRLSREFDPAIHMGLGVNTEFLDPG------KKTNNWIPISWGNNNSMGGPLGEVL 465
Query: 555 HLSTNNNVSDHCDKNSSDLNLMTDGWDNSPPIGSSPTGVLQKTAFG 600
+ +T NSP GSSPTGVLQK+ FG
Sbjct: 466 NSTT-----------------------NSPKFGSSPTGVLQKSTFG 488
>AT4G37740.1 | Symbols: AtGRF2, GRF2 | growth-regulating factor 2 |
chr4:17725533-17727609 REVERSE LENGTH=535
Length = 535
Score = 269 bits (687), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 193/487 (39%), Positives = 237/487 (48%), Gaps = 127/487 (26%)
Query: 142 HGAFAGTRGPFTPSQWMELEHQALIYKYITANVPVPSHLLIPIKKALESAGFCNFSTGIL 201
G F G +GPFT +QW ELE QALIYKYITANVPVPS LLI IKK+ + G L
Sbjct: 155 QGNFTGVKGPFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSF-------YPYGSL 207
Query: 202 RPNALAWGGFHLGFSN-NTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRK 260
P++ WG FHLGF+ N DPEPGRCRRTDGKKWRCSRDAV DQKYCERH+NRGRHRSRK
Sbjct: 208 PPSSFGWGTFHLGFAGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRK 267
Query: 261 PVEGQSGHAVXXXXXXXXXXXXXXPNGLKLNASSIVVPGNSACNNLTFANQEHKNMQNPL 320
PVE QSG P VV GN+ N N
Sbjct: 268 PVEVQSGQNQTAAAASKAVTTPQQP----------VVAGNT-------------NRSNAR 304
Query: 321 SADNTSASNTINRMFMNCKENDKASERMQDGPVLPMLPPTLELKPKE----------NNN 370
++ N S + I ++N ++E + + + + P T+ L+PKE NNN
Sbjct: 305 ASSNRSLA--IGSQYIN-----PSTESLPNNRGVSIYPSTVNLQPKESPVIHQKHRNNNN 357
Query: 371 PFMIQKPDFPYEEPSRNSEFGFVTSDSLLNPXXXXXXXXXXXXXXXXXXXXXQQNTGSQH 430
PF EFG ++SDSLLNP + GS
Sbjct: 358 PF----------------EFGHISSDSLLNPNTA-------------------KTYGSS- 381
Query: 431 PLRHFIDDCPKSQSDXXXXXXXXXRSGVSWTELDHMQSDRTQLSISTPITSSDHFLSFNS 490
F+D + SW E + SD TQLS+S PI SS + N+
Sbjct: 382 ----FLDFSSNQEKHSGNHNHN------SWPE--ELTSDWTQLSMSIPIASSSPSSTHNN 429
Query: 491 SPSNEKLTLSPLRLSRELDPIQMGLGVGSAAINESNNTTTTRQATNWIPITWESSMGGPL 550
+ + EK TLSPLRLSRELD S +E+ T ++ WIPI+W +S+GGPL
Sbjct: 430 NNAQEKTTLSPLRLSRELDL--------SIQTDETTIEPTVKKVNTWIPISWGNSLGGPL 481
Query: 551 GEVLHLSTNNNVSDHCDKNSSDLNLMTDGWDNSPPIGSSPTGVLQKTAFGXXXXXXXXXX 610
GEVL+ +T NSP GSSPTGVLQK+ F
Sbjct: 482 GEVLNSTT-----------------------NSPTFGSSPTGVLQKSTFCSLSNNSSVSS 518
Query: 611 PRAENNK 617
P AENN+
Sbjct: 519 PIAENNR 525
>AT3G13960.1 | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 |
chr3:4608526-4610160 FORWARD LENGTH=397
Length = 397
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 86/115 (74%), Gaps = 4/115 (3%)
Query: 149 RGPFTPSQWMELEHQALIYKYITANVPVPSHLLIPIKKALESAGFCNFSTGILRPNALAW 208
R PFTP+QW ELEHQALIYKY+ + VPVP L+ I+++L+++ + +L +L W
Sbjct: 14 RPPFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRSLDTS----LVSRLLPHQSLGW 69
Query: 209 GGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVE 263
G + +GF DPEPGRCRRTDGKKWRCSR+A D KYCE+HM+RGR+R+RK ++
Sbjct: 70 GCYQMGFGRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLD 124
>AT2G36400.1 | Symbols: AtGRF3, GRF3 | growth-regulating factor 3 |
chr2:15270300-15272617 REVERSE LENGTH=398
Length = 398
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Query: 152 FTPSQWMELEHQALIYKYITANVPVPSHLLIPIKKALESAGFCNFSTGILRPNALAWGGF 211
F+ +QW ELE QALIY+Y+ A VP LL+PIKK+L F L+ +
Sbjct: 77 FSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLLHLSPSYFLHHPLQHLPHYQPAW 136
Query: 212 HLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVE 263
+LG + DPEPGRCRRTDGKKWRCSRD KYCERHM+RGR+RSRKPVE
Sbjct: 137 YLGRAA-MDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVE 187
>AT2G06200.1 | Symbols: AtGRF6, GRF6 | growth-regulating factor 6 |
chr2:2426340-2427255 FORWARD LENGTH=244
Length = 244
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 147 GTRGPFTPSQWMELEHQALIYKYITANVPVPSHLLIPIKKAL------ESAGFCNFSTGI 200
TR PFT SQW ELE+QAL++KY+ AN+PVP HLL IK+ S+ +F +
Sbjct: 2 ATRIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPT 61
Query: 201 LRPNALAWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHR--S 258
L P+ W + +G D EPGRCRRTDGKKWRCS++A D KYCERHM+RG++R S
Sbjct: 62 LSPH-FGWNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSS 120
Query: 259 RKP 261
RKP
Sbjct: 121 RKP 123
>AT3G52910.1 | Symbols: AtGRF4, GRF4 | growth-regulating factor 4 |
chr3:19616177-19618268 REVERSE LENGTH=380
Length = 380
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 76/118 (64%), Gaps = 12/118 (10%)
Query: 152 FTPSQWMELEHQALIYKYITANVPVPSHLLIPIKKALESAGFCNFSTGILRPN------A 205
F+ +QW ELE QALIY+Y+ A VP LL+PIKK+L +F L+ + +
Sbjct: 83 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKKSLLHQSPMHFLHHPLQHSFPHHQPS 142
Query: 206 LAWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVE 263
WG DPEPGRC+RTDGKKWRCSRD V KYC+RH++RGR+RSRKPVE
Sbjct: 143 WYWG------RGAMDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVE 194
>AT4G24150.1 | Symbols: AtGRF8, GRF8 | growth-regulating factor 8 |
chr4:12535972-12539387 FORWARD LENGTH=493
Length = 493
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 87/160 (54%), Gaps = 28/160 (17%)
Query: 137 SSGSMHGAFAGTRGP-FTPSQWMELEHQALIYKYITANVPVPSHLLIPIKKALES----- 190
SSG M + G F+ +QW ELE Q IYKY+ A+VPVP LL P K +S
Sbjct: 134 SSGEMRRSMNEDAGAAFSEAQWHELERQRNIYKYMMASVPVPPELLTPFPKNHQSNTNPD 193
Query: 191 ------------AGFCNF--STGILRPNALAWGG-FHLGF----SNNT-DPEPGRCRRTD 230
A + N S + A+A GG LG SNNT D EP RC+RTD
Sbjct: 194 VDTYRSGMFSIYADYKNLPLSMWMTVTVAVATGGSLQLGIASSASNNTADLEPWRCKRTD 253
Query: 231 GKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG--QSGH 268
GKKWRCSR+ + DQKYCERH ++ R RSRK VE QS H
Sbjct: 254 GKKWRCSRNVIPDQKYCERHTHKSRPRSRKHVESSHQSSH 293
>AT5G53660.1 | Symbols: AtGRF7, GRF7 | growth-regulating factor 7 |
chr5:21794636-21795929 FORWARD LENGTH=365
Length = 365
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 70/113 (61%), Gaps = 21/113 (18%)
Query: 151 PFTPSQWMELEHQALIYKYITANVPVPSHLLIPIKKALESAGFCNFSTGILRPNALAWGG 210
PFT +Q ELE QA+IYKY+ A++PVP LL+ + SA CN N G
Sbjct: 59 PFTNAQLKELERQAMIYKYMIASIPVPFDLLV---SSPSSASPCN--------NKNIAG- 106
Query: 211 FHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVE 263
D EPGRCRRTDGKKWRC+++ V + KYCE+H++RGR RSRK VE
Sbjct: 107 ---------DLEPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVE 150
>AT2G45480.1 | Symbols: AtGRF9, GRF9 | growth-regulating factor 9 |
chr2:18745583-18747403 FORWARD LENGTH=429
Length = 429
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 8/108 (7%)
Query: 155 SQWMELEHQALIYKYITANVPVPSHLLIPI--KKALESAGFCNFSTGILRPNALAWGGFH 212
+Q ME QAL+Y+YI A + VP HL++PI AL S+ N+ + L N G H
Sbjct: 26 AQLMEFRMQALVYRYIEAGLRVPHHLVVPIWNSLALSSSSNYNYHSSSLLSNK---GVTH 82
Query: 213 LGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRK 260
+ + + EP RCRRTDGKKWRCS ++ +KYCERHM+RGR RSRK
Sbjct: 83 I---DTLETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRK 127
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 219 TDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGH 268
TD EPGRCRRTDGKKWRCS+D + QKYC++HM+RG + + PV+ + H
Sbjct: 304 TDNEPGRCRRTDGKKWRCSKDVLSGQKYCDKHMHRG-MKKKHPVDTTNSH 352