Miyakogusa Predicted Gene
- Lj5g3v0322430.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0322430.1 Non Chatacterized Hit- tr|I1MXF9|I1MXF9_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,78.25,0,FF,FF domain;
WW,WW/Rsp5/WWP; coiled-coil,NULL; FF domain,FF domain; WW
domain,WW/Rsp5/WWP; seg,NULL,CUFF.52864.1
(999 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G44910.1 | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing pr... 673 0.0
AT1G44910.2 | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing pr... 673 0.0
AT3G19670.1 | Symbols: ATPRP40B, PRP40B | pre-mRNA-processing pr... 471 e-132
AT3G19840.1 | Symbols: ATPRP40C, PRP40C | pre-mRNA-processing pr... 86 1e-16
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 50 7e-06
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 50 7e-06
AT4G16280.1 | Symbols: FCA | RNA binding;abscisic acid binding |... 50 1e-05
>AT1G44910.1 | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing
protein 40A | chr1:16975930-16982818 FORWARD LENGTH=958
Length = 958
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/783 (49%), Positives = 486/783 (62%), Gaps = 59/783 (7%)
Query: 66 RPIQPGHPASSSQSMPMPYIQ-NRPLTSFPPHSQQTVPHPSNHMPGLPVSGAPTHSSYTF 124
RP QP H SSSQ++ +PYIQ N+ LTS Q P M G SG P S YTF
Sbjct: 63 RPGQPVHITSSSQAVSVPYIQTNKILTSGSTQPQPNAPP----MTGFATSGPPFSSPYTF 118
Query: 125 TPS-YGQQQNNANALVQYQHPPHTHA-PPAGQPWLXXXXXXXXXXXXXXXXGVQPSGTTS 182
PS Y QQQ +LVQ H PPA W G Q S
Sbjct: 119 VPSSYPQQQ--PTSLVQPNSQMHVAGVPPAANTWPVPVNQSTSLVSPVQQTGQQTPVAVS 176
Query: 183 TDAA--TPATNQSSASDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWK 240
TD TP SASDWQEHTSADGR+YYYNKRT+QS+WEKPLELM+P+ERADASTVWK
Sbjct: 177 TDPGNLTP----QSASDWQEHTSADGRKYYYNKRTKQSNWEKPLELMTPLERADASTVWK 232
Query: 241 EFTSSDGRKYYYNKVTQQSTWSIPEELKLAREQAHREMNQGMQSEXXXXXXXXXXXXXXX 300
EFT+ +G+KYYYNKVT++S W+IPE+LKLAREQA + SE
Sbjct: 233 EFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSEAGS------------ 280
Query: 301 XXXXXXXXXXXXXXXXXXXXPSPVTPIAATDQQLLVS---------GSIVTSNPTGVEPS 351
+P++ AA+ L VS S +T + + +
Sbjct: 281 ---------------------TPLSHHAASSSDLAVSTVTSVVPSTSSALTGHSSSPIQA 319
Query: 352 NVATMSTVPTTVAGSSEVAAKLLDSKMPSII-ENQASQDLGSVN-GASLQDVEEAKRGLP 409
+A T P +VA + + + D++ +I +N +S+ N GA+ Q+ E + +
Sbjct: 320 GLAVPVTRPPSVAPVTPTSGAISDTEATTIKGDNLSSRGADDSNDGATAQNNEAENKEMS 379
Query: 410 VVGKVNITPPEEKTNDDETLVYANKQEAKNAFKAFLESVNVQSDWTWEQAMREIINDKRY 469
V GK N++P +K N +E +VYA KQEAK AFK+ LESVNV SDWTWEQ ++EI++DKRY
Sbjct: 380 VNGKANLSPAGDKANVEEPMVYATKQEAKAAFKSLLESVNVHSDWTWEQTLKEIVHDKRY 439
Query: 470 NALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEDCKELTSSTRWSKAII 529
AL+TLGERKQAFNEYLGQRKK+EAEERR +QK+AREEF KMLE+C+EL+SS +WSKA+
Sbjct: 440 GALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEFVKMLEECEELSSSLKWSKAMS 499
Query: 530 MFENDERFNAVERPRDRADLFESYLVXXXXXXXXXXXXXXXXNIAEYRKFLESCDYVKVN 589
+FEND+RF AV+RPRDR DLF++Y+V +A+YRKFLE+CDY+K
Sbjct: 500 LFENDQRFKAVDRPRDREDLFDNYIVELERKEREKAAEEHRQYMADYRKFLETCDYIKAG 559
Query: 590 SQWRKIQXXXXXXXXXXXXXXXXXXXVYQDYIRDLEKEEEEQKRIHKDRVRRGERKNRDA 649
+QWRKIQ +++YI DLEKEEEE KR+ K+ VRR ERKNRDA
Sbjct: 560 TQWRKIQDRLEDDDRCSCLEKIDRLIGFEEYILDLEKEEEELKRVEKEHVRRAERKNRDA 619
Query: 650 FRKLLEEHVAAGVLTGRTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEDLEKQY 709
FR LLEEHVAAG+LT +T W +YC++++DLPQYQAVASNTSGSTPKDLFEDV E+LEKQY
Sbjct: 620 FRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVASNTSGSTPKDLFEDVTEELEKQY 679
Query: 710 HEDKILIKDIIKSGKXXXXXXSVFEDFKLAVLEEAACQRISEINXXXXXXXXXXXXXXXX 769
HEDK +KD +KS K +FEDFK A+ E+ + Q+IS+IN
Sbjct: 680 HEDKSYVKDAMKSRKISMVSSWLFEDFKSAISEDLSTQQISDINLKLIYDDLVGRVKEKE 739
Query: 770 XXXXXXXXXXXDDFTNLLYTFKEITITSKWEDCKPLFEETQEYRSIGDESYSREIFEEYI 829
++FTNLL+TFKEIT+ S WED K L EE+QEYRSIGDES S+ +FEEYI
Sbjct: 740 EKEARKLQRLAEEFTNLLHTFKEITVASNWEDSKQLVEESQEYRSIGDESVSQGLFEEYI 799
Query: 830 TYL 832
T L
Sbjct: 800 TSL 802
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 32/37 (86%), Gaps = 3/37 (8%)
Query: 939 HGSDRKKSRKHANSPESDNESRHKRHKREHWDGSRRT 975
HG+DRKKSRKHANSPES++E+RHKR K+E SRR+
Sbjct: 913 HGNDRKKSRKHANSPESESENRHKRQKKE---SSRRS 946
>AT1G44910.2 | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing
protein 40A | chr1:16975930-16982647 FORWARD LENGTH=926
Length = 926
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/783 (49%), Positives = 486/783 (62%), Gaps = 59/783 (7%)
Query: 66 RPIQPGHPASSSQSMPMPYIQ-NRPLTSFPPHSQQTVPHPSNHMPGLPVSGAPTHSSYTF 124
RP QP H SSSQ++ +PYIQ N+ LTS Q P M G SG P S YTF
Sbjct: 63 RPGQPVHITSSSQAVSVPYIQTNKILTSGSTQPQPNAPP----MTGFATSGPPFSSPYTF 118
Query: 125 TPS-YGQQQNNANALVQYQHPPHTHA-PPAGQPWLXXXXXXXXXXXXXXXXGVQPSGTTS 182
PS Y QQQ +LVQ H PPA W G Q S
Sbjct: 119 VPSSYPQQQ--PTSLVQPNSQMHVAGVPPAANTWPVPVNQSTSLVSPVQQTGQQTPVAVS 176
Query: 183 TDAA--TPATNQSSASDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWK 240
TD TP SASDWQEHTSADGR+YYYNKRT+QS+WEKPLELM+P+ERADASTVWK
Sbjct: 177 TDPGNLTP----QSASDWQEHTSADGRKYYYNKRTKQSNWEKPLELMTPLERADASTVWK 232
Query: 241 EFTSSDGRKYYYNKVTQQSTWSIPEELKLAREQAHREMNQGMQSEXXXXXXXXXXXXXXX 300
EFT+ +G+KYYYNKVT++S W+IPE+LKLAREQA + SE
Sbjct: 233 EFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSEAGS------------ 280
Query: 301 XXXXXXXXXXXXXXXXXXXXPSPVTPIAATDQQLLVS---------GSIVTSNPTGVEPS 351
+P++ AA+ L VS S +T + + +
Sbjct: 281 ---------------------TPLSHHAASSSDLAVSTVTSVVPSTSSALTGHSSSPIQA 319
Query: 352 NVATMSTVPTTVAGSSEVAAKLLDSKMPSII-ENQASQDLGSVN-GASLQDVEEAKRGLP 409
+A T P +VA + + + D++ +I +N +S+ N GA+ Q+ E + +
Sbjct: 320 GLAVPVTRPPSVAPVTPTSGAISDTEATTIKGDNLSSRGADDSNDGATAQNNEAENKEMS 379
Query: 410 VVGKVNITPPEEKTNDDETLVYANKQEAKNAFKAFLESVNVQSDWTWEQAMREIINDKRY 469
V GK N++P +K N +E +VYA KQEAK AFK+ LESVNV SDWTWEQ ++EI++DKRY
Sbjct: 380 VNGKANLSPAGDKANVEEPMVYATKQEAKAAFKSLLESVNVHSDWTWEQTLKEIVHDKRY 439
Query: 470 NALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEDCKELTSSTRWSKAII 529
AL+TLGERKQAFNEYLGQRKK+EAEERR +QK+AREEF KMLE+C+EL+SS +WSKA+
Sbjct: 440 GALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEFVKMLEECEELSSSLKWSKAMS 499
Query: 530 MFENDERFNAVERPRDRADLFESYLVXXXXXXXXXXXXXXXXNIAEYRKFLESCDYVKVN 589
+FEND+RF AV+RPRDR DLF++Y+V +A+YRKFLE+CDY+K
Sbjct: 500 LFENDQRFKAVDRPRDREDLFDNYIVELERKEREKAAEEHRQYMADYRKFLETCDYIKAG 559
Query: 590 SQWRKIQXXXXXXXXXXXXXXXXXXXVYQDYIRDLEKEEEEQKRIHKDRVRRGERKNRDA 649
+QWRKIQ +++YI DLEKEEEE KR+ K+ VRR ERKNRDA
Sbjct: 560 TQWRKIQDRLEDDDRCSCLEKIDRLIGFEEYILDLEKEEEELKRVEKEHVRRAERKNRDA 619
Query: 650 FRKLLEEHVAAGVLTGRTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEDLEKQY 709
FR LLEEHVAAG+LT +T W +YC++++DLPQYQAVASNTSGSTPKDLFEDV E+LEKQY
Sbjct: 620 FRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVASNTSGSTPKDLFEDVTEELEKQY 679
Query: 710 HEDKILIKDIIKSGKXXXXXXSVFEDFKLAVLEEAACQRISEINXXXXXXXXXXXXXXXX 769
HEDK +KD +KS K +FEDFK A+ E+ + Q+IS+IN
Sbjct: 680 HEDKSYVKDAMKSRKISMVSSWLFEDFKSAISEDLSTQQISDINLKLIYDDLVGRVKEKE 739
Query: 770 XXXXXXXXXXXDDFTNLLYTFKEITITSKWEDCKPLFEETQEYRSIGDESYSREIFEEYI 829
++FTNLL+TFKEIT+ S WED K L EE+QEYRSIGDES S+ +FEEYI
Sbjct: 740 EKEARKLQRLAEEFTNLLHTFKEITVASNWEDSKQLVEESQEYRSIGDESVSQGLFEEYI 799
Query: 830 TYL 832
T L
Sbjct: 800 TSL 802
>AT3G19670.1 | Symbols: ATPRP40B, PRP40B | pre-mRNA-processing
protein 40B | chr3:6828242-6836582 REVERSE LENGTH=992
Length = 992
Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust.
Identities = 270/663 (40%), Positives = 387/663 (58%), Gaps = 31/663 (4%)
Query: 188 PATNQSSASDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSDG 247
P +Q + +DW EHTSADGR+Y++NKRT++S+WEKP+ELM+ ERADA T WKE +S DG
Sbjct: 199 PLPSQKALTDWVEHTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPDG 258
Query: 248 RKYYYNKVTQQSTWSIPEELKLAREQAHREMNQGMQSEXXXXXXXXXXXXXXXXXXXXXX 307
RKYYYNK+T+QSTW++PEE+K+ REQA QG +E
Sbjct: 259 RKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEGIIDASEVLTRSDTASTAAPTG 318
Query: 308 XXXXXXXXXXXXXPSPVTPIAATDQQLLVSG----SIVTSNPTGVEPSNVATMSTVPTT- 362
PS + ++ L S + V + + VE + MS T+
Sbjct: 319 L------------PSQTSTSEGVEKLTLTSDLKQPASVPGSSSPVENVDRVQMSADETSQ 366
Query: 363 VAGSSEV-----------AAKLLDSKMPSIIENQASQDLGSVNG--ASLQDVEEAKRGLP 409
+ +SE AA L++ S+ + S D+ + N S +E+++ +
Sbjct: 367 LCDTSETDGLSVPVTETSAATLVEKDEISVGNSGDSDDMSTKNANQGSGSGPKESQKPMV 426
Query: 410 VVGKVNITPPEEKTNDDETLVYANKQEAKNAFKAFLESVNVQSDWTWEQAMREIINDKRY 469
KV + EEK E+ + NK EA + FK+ L+S V SDWTWEQAMREIINDKRY
Sbjct: 427 ESEKVE-SQTEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRY 485
Query: 470 NALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEDCKELTSSTRWSKAII 529
AL+TLGERKQAFNE+L Q K+ EER +QK+ E+F +MLE+C ELT STRWSK +
Sbjct: 486 GALRTLGERKQAFNEFLLQTKRAAEEERLARQKKLYEDFKRMLEECVELTPSTRWSKTVT 545
Query: 530 MFENDERFNAVERPRDRADLFESYLVXXXXXXXXXXXXXXXXNIAEYRKFLESCDYVKVN 589
MFE+DERF A+ER +DR ++FE ++ NI EY++FLESC+++K N
Sbjct: 546 MFEDDERFKALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKPN 605
Query: 590 SQWRKIQXXXXXXXXXXXXXXXXXXXVYQDYIRDLEKEEEEQKRIHKDRVRRGERKNRDA 649
SQWRK+Q ++Q+Y+RDLE+EEEE+K+I K+ +++ ERK+RD
Sbjct: 606 SQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRDE 665
Query: 650 FRKLLEEHVAAGVLTGRTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEDLEKQY 709
F LL+EH+A G LT +T WR+Y +KV+DLP Y A+ASN+SG+TPKDLFED EDL+K+
Sbjct: 666 FHGLLDEHIATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKRD 725
Query: 710 HEDKILIKDIIKSGKXXXXXXSVFEDFKLAVLEEAACQRISEINXXXXXXXXXXXXXXXX 769
HE K IKD++K K S F++FK+++ E+ I ++
Sbjct: 726 HELKSQIKDVLKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEKE 785
Query: 770 XXXXXXXXXXXDDFTNLLYTFKEITITSKWEDCKPLFEETQEYRSIGDESYSREIFEEYI 829
+ ++L +FK+IT +S WE+ K L E +++ +IGDES+ + FE+Y+
Sbjct: 786 EKEARKQTRQTEKLVDMLRSFKDITASSSWEELKHLVEGSEKCSTIGDESFRKRCFEDYV 845
Query: 830 TYL 832
+ L
Sbjct: 846 SLL 848
>AT3G19840.1 | Symbols: ATPRP40C, PRP40C | pre-mRNA-processing
protein 40C | chr3:6891228-6897227 FORWARD LENGTH=835
Length = 835
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 106/451 (23%), Positives = 174/451 (38%), Gaps = 77/451 (17%)
Query: 198 WQEHTSADGRRYYYNKRTRQSSWEKPLELMS-----PIERADAS------TVWKEFTSSD 246
W H S G YYYN T QS++EKP P++ S T W +++D
Sbjct: 249 WTAHKSEAGVLYYYNSVTGQSTYEKPPGFGGEPDKVPVQPIPVSMESLPGTDWALVSTND 308
Query: 247 GRKYYYNKVTQQSTWSIPEELK-LAREQAHREMNQGMQSEXXXXXXXXXXXXXXXXXXXX 305
G+KYYYN T+ S+W IP E+K ++ R M
Sbjct: 309 GKKYYYNNKTKVSSWQIPAEVKDFGKKLEERAMES------------------------- 343
Query: 306 XXXXXXXXXXXXXXXPSPVTPIAATDQQLLVSGSIVTSNPTGVEPSNVATMSTVPTTVAG 365
V + + D L GS +TS + +++ TT G
Sbjct: 344 ------------------VASVPSAD--LTEKGSDLTSLSAPAISNGGRDAASLKTTNFG 383
Query: 366 SSE---VAAKLLDSKMP--SIIENQASQDLGSVNGASLQDVEEAKRGLPVVGKVNITP-- 418
SS V KL DS MP S I ++A N +V + GKV P
Sbjct: 384 SSALDLVKKKLHDSGMPVSSTITSEA-------NSGKTTEVTPSGESGNSTGKVKDAPGA 436
Query: 419 ---PEEKTNDDETLVYANKQEAKNAFKAFLESVNVQSDWTWEQAMREIINDKRYNALKTL 475
+ ++ ++ +K+E FK L+ + WE+ + +II D R+ A+ +
Sbjct: 437 GALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGIAPFSKWEKELPKIIFDPRFKAIPSH 496
Query: 476 GERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEDCK-ELTSSTRWSKAIIMFEND 534
R+ F +Y+ R + E E+R K A E F ++L+D ++ T + + ND
Sbjct: 497 SVRRSLFEQYVKTRAEEERREKRAAHKAAIEGFRQLLDDASTDIDQHTDYRAFKKKWGND 556
Query: 535 ERFNAVERPRDRADLFESYLVXXXXXXXXXXXXXXXXNIAEYRKFLESCDYVKVNSQWRK 594
RF A+ER ++R L ++ ++++ L + + +NS W K
Sbjct: 557 LRFEAIER-KEREGLLNERVLSLKRSAEQKAQEIRAAAASDFKTMLRERE-ISINSHWSK 614
Query: 595 IQXXXXXXXXXXXXXXXXXXXVYQDYIRDLE 625
++ Y +YI +L+
Sbjct: 615 VKDSLRNEPRYRSVAHEDREVFYYEYIAELK 645
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 186 ATPATNQSSAS---DWQEHTSADGRRYYYNKRTRQSSWEKPLELM 227
A PA +QS S W EHTS DG +YYYN T +S WEKP E++
Sbjct: 507 AAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMI 551
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 186 ATPATNQSSAS---DWQEHTSADGRRYYYNKRTRQSSWEKPLELM 227
A PA +QS S W EHTS DG +YYYN T +S WEKP E++
Sbjct: 582 AAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMI 626
>AT4G16280.1 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9210632 REVERSE LENGTH=505
Length = 505
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 186 ATPATNQSSAS---DWQEHTSADGRRYYYNKRTRQSSWEKPLELM 227
A PA +QS S W EHTS DG +YYYN T +S WEKP E++
Sbjct: 340 AAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMI 384