Miyakogusa Predicted Gene

Lj5g3v0310140.4

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0310140.4 tr|G7ICD6|G7ICD6_MEDTR Sigma factor sigB
regulation protein rsbQ OS=Medicago truncatula
GN=MTR_1g018,78.49,0,SIGMA FACTOR SIGB REGULATION PROTEIN RSBQ,NULL;
ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN,NULL; a,CUFF.52840.4
         (268 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03990.1 | Symbols:  | alpha/beta-Hydrolases superfamily prot...   386   e-108
AT4G37470.1 | Symbols:  | alpha/beta-Hydrolases superfamily prot...   299   1e-81
AT3G24420.1 | Symbols:  | alpha/beta-Hydrolases superfamily prot...   221   3e-58

>AT3G03990.1 | Symbols:  | alpha/beta-Hydrolases superfamily protein
           | chr3:1033788-1034591 FORWARD LENGTH=267
          Length = 267

 Score =  386 bits (992), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/250 (72%), Positives = 212/250 (84%)

Query: 4   SILDVHNVSVEGSGNEYIVFGHGLGTDKSVWKRILPYFEPNYKVILFDLVFAGTINPDYF 63
           +IL+  NV V G+G+  +   HG GTD+S W  ILPYF  NY+V+L+DLV AG++NPDYF
Sbjct: 5   NILEALNVRVVGTGDRILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAGSVNPDYF 64

Query: 64  DFRRYSTLDPYVDDLLAILDALRVTRCAFVGHSMSATIGILASIRRPQLFSKLILIGASP 123
           DF RY+TLDPYVDDLL I+D+L +  CA+VGHS+SA IGI+ASIRRP+LFSKLILIG SP
Sbjct: 65  DFNRYTTLDPYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSP 124

Query: 124 RFLNDESYRGGFELNEIEEVFSAMEANYQAWVRGYAPLMVGADVPEAVQEFSRTLFNMRP 183
           RFLNDE Y GGFE  EIE+VFSAMEANY+AWV G+APL VGADVP AV+EFSRTLFNMRP
Sbjct: 125 RFLNDEDYHGGFEEGEIEKVFSAMEANYEAWVHGFAPLAVGADVPAAVREFSRTLFNMRP 184

Query: 184 DITLFVSRTVFNSDLRGILGLVKVPCCIMQTAKDLSVPAAAARYMQEHLGGKTTVEWLNT 243
           DI+LFVSRTVFNSDLRG+LGLV+VP C++QTAKD+SVPA+ A Y++ HLGG TTVE L T
Sbjct: 185 DISLFVSRTVFNSDLRGVLGLVRVPTCVIQTAKDVSVPASVAEYLRSHLGGDTTVETLKT 244

Query: 244 EGHLPHLSAP 253
           EGHLP LSAP
Sbjct: 245 EGHLPQLSAP 254


>AT4G37470.1 | Symbols:  | alpha/beta-Hydrolases superfamily protein
           | chr4:17617045-17618363 REVERSE LENGTH=270
          Length = 270

 Score =  299 bits (766), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 137/248 (55%), Positives = 185/248 (74%), Gaps = 1/248 (0%)

Query: 7   DVHNVSVEGSGNEYIVFGHGLGTDKSVWKRILPYFEPNYKVILFDLVFAGTINPDYFDFR 66
           + HNV V GSG   IV GHG GTD+SVWK ++P+   +Y+V+L+D + AGT NPDYFDF 
Sbjct: 6   EAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFD 65

Query: 67  RYSTLDPYVDDLLAILDALRVTRCAFVGHSMSATIGILASIRRPQLFSKLILIGASPRFL 126
           RYS L+ Y  DL+AIL+ L++  C FVGHS+SA IG+LAS+ RP LFSK+++I ASPR++
Sbjct: 66  RYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYV 125

Query: 127 NDESYRGGFELNEIEEVFSAMEANYQAWVRGYAPLMVGADVPE-AVQEFSRTLFNMRPDI 185
           ND  Y+GGFE  ++ ++F A+ +NY+AW  G+APL VG D+   AVQEFSRTLFNMRPDI
Sbjct: 126 NDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDI 185

Query: 186 TLFVSRTVFNSDLRGILGLVKVPCCIMQTAKDLSVPAAAARYMQEHLGGKTTVEWLNTEG 245
            L V +T+F SD+R IL  V VPC I+Q+ KDL+VP   + Y+  +LG ++ VE + ++G
Sbjct: 186 ALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDG 245

Query: 246 HLPHLSAP 253
           HLP LS+P
Sbjct: 246 HLPQLSSP 253


>AT3G24420.1 | Symbols:  | alpha/beta-Hydrolases superfamily protein
           | chr3:8863111-8864883 REVERSE LENGTH=273
          Length = 273

 Score =  221 bits (564), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 101/245 (41%), Positives = 161/245 (65%), Gaps = 2/245 (0%)

Query: 10  NVSVEGSGNEYIVFGHGLGTDKSVWKRILPYFEPNYKVILFDLVFAGTI-NPDYFDFRRY 68
           N  + GSG   +V  HG G D+SVW +I+P    ++KV++FD +F+G I +   +D  +Y
Sbjct: 15  NAKIIGSGERSMVLAHGFGGDQSVWDKIIPVLSQSFKVLVFDWLFSGAIKDQTLYDPSKY 74

Query: 69  STLDPYVDDLLAILDALRVTRCAFVGHSMSATIGILASIRRPQLFSKLILIGASPRFLND 128
           ++LD + DDL+A+++ L+     FVGHSMS  IG  ASI+RP LF+ L+LI ASPR++N 
Sbjct: 75  NSLDVFSDDLIALMEELKFGPVVFVGHSMSGVIGCAASIKRPDLFTNLLLIAASPRYINS 134

Query: 129 ESYRGGFELNEIEEVFSAMEANYQAWVRGYAPLMVGADVPEAVQEFSRTLFNMRPDITLF 188
           E Y+GGFE  +I+ + +++ +NY+AW   ++  +V +    +VQ F ++L  M+P+  L 
Sbjct: 135 EDYKGGFESKDIDTIITSIGSNYEAWAVDFSSFVVDSRDSLSVQRFEKSLKKMKPETALA 194

Query: 189 VSRTVFNSDLRGILGLVKVPCCIMQTAKDLSVPAAAARYMQEHLGGKTTVEWL-NTEGHL 247
           +++ VF SD R ILG V VPC ++Q   D+ VP + A +MQE + GK+TVE + +  GH 
Sbjct: 195 LAKIVFGSDEREILGQVSVPCHVIQPGNDVVVPVSVAYFMQEKIKGKSTVEIIEDAIGHF 254

Query: 248 PHLSA 252
           P +++
Sbjct: 255 PQMTS 259