Miyakogusa Predicted Gene

Lj5g3v0308810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0308810.1 Non Chatacterized Hit- tr|B8LS03|B8LS03_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,25.19,1e-18,F-box,F-box domain, cyclin-like; no description,NULL; no
description,Kelch-type beta propeller; Kelc,CUFF.52822.1
         (377 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43190.1 | Symbols:  | Galactose oxidase/kelch repeat superfa...   296   2e-80
AT5G15710.1 | Symbols:  | Galactose oxidase/kelch repeat superfa...    85   6e-17
AT1G27340.1 | Symbols:  | Galactose oxidase/kelch repeat superfa...    66   3e-11

>AT5G43190.1 | Symbols:  | Galactose oxidase/kelch repeat
           superfamily protein | chr5:17340300-17341511 REVERSE
           LENGTH=403
          Length = 403

 Score =  296 bits (757), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 168/365 (46%), Positives = 215/365 (58%), Gaps = 14/365 (3%)

Query: 24  KMDPKIWSKLPPEILEYILSFLPLKTLLNLRSTCKGFWSLVXXXXXXXXXXXXXXXXXXX 83
            +DP IWS LP  +LE+ILS LP KTLL LRS  +   SL+                   
Sbjct: 42  NLDPNIWSNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISDHSFSLPSFLLL 101

Query: 84  XXXXXXXXHRHYPLYDCTLGTWRNIXXXXXXXXXXXXXXXXXXGGLFCLSDSMSCSLL-- 141
                      +PL++  L +W  +                   GL C S S S      
Sbjct: 102 SHPQSF---NSFPLFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVSSLS 158

Query: 142 IFNLLAKTSRKIQYPSYSLHLEHLTFVTTPSGYIIFSL---FSASATNRAFVYDSEVRSW 198
           IFN L ++SR I+ P Y    E L+ VT+P GY IF+L    SA+++    +YDS  RSW
Sbjct: 159 IFNPLTRSSRSIKLPCYPFPFELLSLVTSPKGYKIFTLCSSSSAASSRSVCLYDSGDRSW 218

Query: 199 RRFNGFGPILGDKLHQQGVFFNRGLYFATPEPFSIVRFDLESGVWERPVGE----LPGQL 254
           R+F G   +L    +Q GVF+N  LYFA  EPF IV  DL  G W    G+       ++
Sbjct: 219 RKFGGVDQVLPRGFNQDGVFYNGSLYFARSEPFLIVSVDLNDGKWTTATGDGVFPADDEI 278

Query: 255 TFARLVSDGEGK-LYLIGGVGNNGISRSMKLWELGEAGD-WVEVQSLPELMCRKFVSVCY 312
           TFARLVSD E K LY++GG+G+NGI RS+K+WE  E  + W+EV++LP+++CRKF SVCY
Sbjct: 279 TFARLVSDPEKKILYMVGGIGSNGICRSIKIWEFKEETESWIEVETLPDIVCRKFTSVCY 338

Query: 313 HKYEHVYCFWHEGMICICCYTWPEILYYLVSRRTWHWLPRCPSLPLKCSCGFKWFSFVPK 372
           H YEHVYC WH+ MIC+CCY WPEIL++ V RRTWHW+P+CPSLP K SCGF+WFSFVP 
Sbjct: 339 HNYEHVYCLWHKEMICVCCYNWPEILFFHVGRRTWHWVPKCPSLPEKWSCGFRWFSFVPS 398

Query: 373 LYASV 377
           L ASV
Sbjct: 399 LSASV 403


>AT5G15710.1 | Symbols:  | Galactose oxidase/kelch repeat
           superfamily protein | chr5:5122791-5124137 FORWARD
           LENGTH=448
          Length = 448

 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 145/363 (39%), Gaps = 20/363 (5%)

Query: 23  MKMDPKIWSKLPPEILEYILSFLPLKTLLNLRSTCKGFWSLVXXXXXXXXXXXXXXXXXX 82
           ++M+  IW+ LP ++L  IL+ +P   +  +RS CK  W+L+                  
Sbjct: 97  VQMEDGIWAMLPEDLLNEILARVPPFMIFRIRSVCKK-WNLILQDNSFLKFHSNVSSHGP 155

Query: 83  XXXXXXXXXHR--HYPLYDCTLGTWRNIXXXXXXXXXXXXXXXXXXGGLFCLS--DSMSC 138
                     +     ++   L TW  I                  GGL C S  D ++ 
Sbjct: 156 CLLTFWKNSPQIPQCSVFSLPLKTWYKIPFTFLPPWAFWLVGSS--GGLVCFSGLDGLTF 213

Query: 139 SLLIFNLLAKTSRKIQYPSYSLHLEHLTFVTTPSG---YIIFSLFSASATNRAFVYDSEV 195
             L+ N L ++ R +    Y+   + +  V         I  S      +    VYDS+ 
Sbjct: 214 RTLVCNPLMQSWRTLPSMHYNQQRQLIMVVDRSDKSFKVIATSDIYGDKSLPTEVYDSKT 273

Query: 196 RSWRRFNGFGPILGDKLHQQGVFFNRGLYFATPEPFSIVRFDLESGVWERPVGELPGQLT 255
             W   +   P + +    +  + +  LY  T  P  ++ + L+SG WE    + P  L 
Sbjct: 274 DKWS-LHQIMPAV-NLCSSKMAYCDSRLYLETLSPLGLMMYRLDSGQWEHIPAKFPRSLL 331

Query: 256 FARLVSDGEGKLYLIGGVGNNGISRSMKLWELGEAG-DWVEVQSLPELMCRKFVSVCYHK 314
              LV+  + +L+L+G +G     +SM++WEL      WVE+  +P    R  + +   +
Sbjct: 332 DGYLVAGTQKRLFLVGRIGLYSTLQSMRIWELDHTKVSWVEISRMPPKYFRALLRLSAER 391

Query: 315 YEHVYCFWHEGMICICCYTWPEILYYLVSRRTWHWLPRCPSLPLKCSCGFKWFSFVPKLY 374
           +E   CF  + +IC   +   + L Y V ++ W W+  C       SC  +   + P+  
Sbjct: 392 FE---CFGQDNLICFTSWNQGKGLLYNVDKKIWSWISGCALQ----SCNSQVCFYEPRFD 444

Query: 375 ASV 377
           ASV
Sbjct: 445 ASV 447


>AT1G27340.1 | Symbols:  | Galactose oxidase/kelch repeat
           superfamily protein | chr1:9495741-9497857 FORWARD
           LENGTH=467
          Length = 467

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 135/344 (39%), Gaps = 26/344 (7%)

Query: 24  KMDPKIWSKLPPEILEYILSFLPLKTLLNLRSTCKGFWSLVXXXXXXXXXXXXXXXXXXX 83
            MD +IW + P ++ E ++S LP+ T    R+ C+ + +L+                   
Sbjct: 111 NMDQEIWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWF 170

Query: 84  XXXXXXXXHRHYPLYDCTLGTWRNIXXXXXXXXXXXXXXXXXXGGLFCLSDSMSCSLLIF 143
                   +    +YD +L  W +                   GGL C  D    +  + 
Sbjct: 171 YTITHENVNSGQ-VYDPSLKKWHH-PIIPALPKKSIVLPMASAGGLVCFLDIGHRNFYVS 228

Query: 144 NLLAKTSRKIQYPSYSLHLE-----HLTFVTTPSGYIIFSLFSASATNRAFVYDSEVRSW 198
           N L K+ R++   S+ +         L   +T  GY +  +          VYDS    W
Sbjct: 229 NPLTKSFRELPARSFKVWSRVAVGMTLNGNSTSHGYKVLWV---GCEGEYEVYDSLSNVW 285

Query: 199 RRFNGFG-----PILGDKLHQQGVFFNRGLYFATPEPFSIVRFDLESGVWERPVGELPGQ 253
            +          P+L +    Q V  +  LYF   +P  I+ +D+ SG W++ +   P  
Sbjct: 286 TKRGTIPSNIKLPVLLN-FKSQPVAIHSTLYFMLTDPEGILSYDMVSGKWKQFIIPGPPD 344

Query: 254 LTFARLVSDGEGKLYLIGGVGNNGISRSMKLWELGEAG-DWVEVQSLPELMCRKFVSVCY 312
           L+   L + GE +L L+G +  N  +  + +WEL +    W EV  +P + C +F    Y
Sbjct: 345 LSDHTLAACGE-RLMLVGLLTKNAAT-CVCIWELQKMTLLWKEVDRMPNIWCLEF----Y 398

Query: 313 HKYEHVYCFWHEG---MICICCYTWPEILYYLVSRRTWHWLPRC 353
            K+  + C  ++G   ++ +       ++ Y    R W  +P C
Sbjct: 399 GKHIRMNCLGNKGCLILLSLRSRQMNRLITYNAVTREWTKVPGC 442