Miyakogusa Predicted Gene

Lj5g3v0308800.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0308800.1 CUFF.52824.1
         (947 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27750.1 | Symbols:  | nucleic acid binding | chr1:9657425-96...   281   1e-75

>AT1G27750.1 | Symbols:  | nucleic acid binding |
           chr1:9657425-9661750 FORWARD LENGTH=1075
          Length = 1075

 Score =  281 bits (720), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/375 (41%), Positives = 211/375 (56%), Gaps = 40/375 (10%)

Query: 17  SCLLMLALNKDPSLRKWMLRRCKKLLDL--LTNASLEIRSVLQGILGMFAQQTDLEDCHL 74
           SCLL + + K  S+ +W   + KK+  L    + S  + S L+GI G   +   LEDC +
Sbjct: 337 SCLLEMVIRKSSSIGRWAFFQYKKICSLSSFVDISSAVTS-LEGIFGFVGKNIKLEDCQM 395

Query: 75  XXXXXXXXXXXYMNRNYTVTRISKEHESIGE--ASGKGSHFDNGVSRSMGVEMGEEGNML 132
                           ++V+ + K H S      S  GS +D G SRSM  E  ++ ++ 
Sbjct: 396 DSDEDDYG-------KFSVSHV-KPHSSADNDVRSSAGSVYDAGGSRSMDFETVDQRDLS 447

Query: 133 HVRCSTPRDSVTHQIFSPAVKTQVDYRFNLFDGRNDSPNVEKTQGLNMSLNSPLLRSSSG 192
             R S PR  +     SP+ +   D R N  D RN+                  + + S 
Sbjct: 448 CGRSSVPRGLLNQHTPSPSARGPSDLRSNSTDRRNN-----------------FVLAGSP 490

Query: 193 AFRNVHASPSHHFMSPTASTRSQIAWCCDGDPAAMDVVSASKQLWVGYVAPDVPENHIRF 252
            ++ V   PS            QIAW  DGDP A D+  AS QLW+GY+ PD  E H+RF
Sbjct: 491 VYQAVPHGPSS----------GQIAWYLDGDPTAFDIFPASGQLWLGYLGPDETEGHLRF 540

Query: 253 QLERFGPIERFIFFPVKGFALVEYRGIIDAIKARHYLPGNFPCRVKFMDIGLGTRGAVNG 312
           QL+R+GP++RF F PVKGFAL EYR IIDAI+AR YL   FP R+KFMDIG+G RG++NG
Sbjct: 541 QLDRYGPVDRFFFDPVKGFALAEYRSIIDAIRAREYLRAQFPWRIKFMDIGVGARGSLNG 600

Query: 313 IAVGISSHIYVGNISSQWARDEILHESRKVIHKGPLAVIDLSCEGALLMEFETPEEAVSV 372
           +A G  +H+Y+G ISSQW RDEI+HESR+ ++KGP  V DL  E ALLMEF+TP++A  V
Sbjct: 601 VAYGYCTHLYIGGISSQWERDEIVHESRQALYKGPRMVTDLYYEHALLMEFDTPDDAAIV 660

Query: 373 MLHLRQLRRERNSYN 387
           M HLR  R E++ ++
Sbjct: 661 MAHLRFFRGEKSKFH 675



 Score =  200 bits (508), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/159 (62%), Positives = 123/159 (77%)

Query: 785  VQEVVSMECSGQSLQYQWQGNLCKSGVNYCTIYACRADSDICRYSNTIPEPAEWPTKLDM 844
            V ++   E S Q++ +QWQG L KSGV+Y TI A R +SDIC+Y    PEP +WP KLDM
Sbjct: 913  VTQLCGSEASKQNIGHQWQGALSKSGVHYSTIIAQRLESDICKYIIGSPEPVQWPVKLDM 972

Query: 845  TKRTDFRHVKSTLAATPSHRREVCHLIPSSTSDHKRFQDFVSYLKQKDCAGVIKIPASKS 904
            TKRTD ++VK+T A T  H+REVC LIP++ SD K  QDF++YLKQ+DCAGVIKIPAS  
Sbjct: 973  TKRTDMKNVKATFANTQPHKREVCQLIPAAFSDRKGLQDFITYLKQRDCAGVIKIPASSP 1032

Query: 905  IWARLLFILPHSLETCSLLSIAPDPSDCLIALVLPKETN 943
            +WAR LFILPHS ETCSLLS++P  S+CLI LVLPK+TN
Sbjct: 1033 MWARHLFILPHSQETCSLLSVSPSSSECLIGLVLPKDTN 1071



 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 83/206 (40%), Gaps = 40/206 (19%)

Query: 537 LVECSNVDGAVSVLRNLRGCPGLFFQIEFSK------------------PGNQNAVPFSI 578
           L+E    D A  V+ +LR     FF+ E SK                  P     VP S 
Sbjct: 648 LMEFDTPDDAAIVMAHLR-----FFRGEKSKFHLASINRPLPHEDGGSHPERHLQVPPSS 702

Query: 579 KPENNGMELVSPRINTENHNSGVHGAPLSQSNWHFPDSREMSEVGARNDNVSLDPHRGGN 638
           K ++   E VSP ++T+NH + V      Q NW    S  ++        VS  P     
Sbjct: 703 KQDSGSGEYVSPLMSTDNHCNSVPPGATFQQNWPAAGSTLVNSA----QGVSGTPP---C 755

Query: 639 APHLFPGTQGPSILPPQQIQSSPFI-RPVYVPPNGPWDPRGTNNHLPVNQFNTGVMPNNF 697
            P   PG       P  QI  SPF+ +P+Y PPN  WD R       ++     V  ++ 
Sbjct: 756 VPIPAPGQPAVPATPTSQIPPSPFVQQPIYPPPNSSWDTRSL-----ISPSGDAVATSSQ 810

Query: 698 HGG----GVASPFIPVSVTPLAQIQG 719
             G     V+ PF+P  V P++Q QG
Sbjct: 811 MQGPPAQQVSGPFMPPPVHPVSQPQG 836