Miyakogusa Predicted Gene

Lj5g3v0308500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0308500.1 tr|I3S194|I3S194_LOTJA 40S ribosomal protein S24
OS=Lotus japonicus PE=2 SV=1,96.35,0,Ribosomal proteins S24e, L23 and
L15e,Ribosomal protein L23/L15e core domain; 40S RIBOSOMAL PROTEIN
,CUFF.52826.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28060.1 | Symbols:  | Ribosomal protein S24e family protein ...   228   1e-60
AT3G04920.1 | Symbols:  | Ribosomal protein S24e family protein ...   207   2e-54

>AT5G28060.1 | Symbols:  | Ribosomal protein S24e family protein |
           chr5:10069791-10070792 REVERSE LENGTH=133
          Length = 133

 Score =  228 bits (580), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 105/122 (86%), Positives = 119/122 (97%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
           MA+KAVTIRTR FMTNRLL+RKQF++DVLHPGRANVSKAELKEKLAR+Y+VKDPN +F F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD++ENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GV 122
           GV
Sbjct: 121 GV 122


>AT3G04920.1 | Symbols:  | Ribosomal protein S24e family protein |
           chr3:1360989-1362065 FORWARD LENGTH=133
          Length = 133

 Score =  207 bits (526), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/122 (88%), Positives = 121/122 (99%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQF++DVLHPGRANVSKAELKEKLAR+Y+VKDPN +FVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD++E+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GV 122
           GV
Sbjct: 121 GV 122