Miyakogusa Predicted Gene

Lj5g3v0308380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0308380.1 tr|Q60DE9|Q60DE9_ORYSJ Os05g0443700 protein
OS=Oryza sativa subsp. japonica GN=B1110B01.19 PE=2
SV=1,46.58,2e-18,t-snare proteins,t-SNARE; seg,NULL;
Syntaxin-6_N,Syntaxin 6, N-terminal; no description,NULL,CUFF.52789.1
         (339 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27700.1 | Symbols:  | Syntaxin/t-SNARE family protein | chr1...   234   5e-62
AT4G30240.1 | Symbols:  | Syntaxin/t-SNARE family protein | chr4...   137   1e-32
AT2G18860.1 | Symbols:  | Syntaxin/t-SNARE family protein | chr2...   135   3e-32
AT2G18860.2 | Symbols:  | Syntaxin/t-SNARE family protein | chr2...   104   8e-23

>AT1G27700.1 | Symbols:  | Syntaxin/t-SNARE family protein |
           chr1:9640394-9641752 REVERSE LENGTH=297
          Length = 297

 Score =  234 bits (598), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 130/320 (40%), Positives = 188/320 (58%), Gaps = 46/320 (14%)

Query: 1   MASSFDRWEKDPFFNAAEEVQESADRMDSAYRTWLHATKDTSSMWNSDELRRDLQTTLGT 60
           M +S DRWEKDPFF AAEEVQESADRM+SAYRTWL+  +D+S +W+S++L RDL   LGT
Sbjct: 1   MTTSLDRWEKDPFFPAAEEVQESADRMESAYRTWLNGKRDSSKVWDSEQLHRDLHAALGT 60

Query: 61  AKWQLEEFERAARLNY-SRTSGEARTRHQDFITAIEDKITKVEHLLHESSTTGSKASMPW 119
            KWQL+EF++A + +Y +R S E R RH++F   +E +++K+E  L E++ +  K +  W
Sbjct: 61  TKWQLDEFQKAVKSSYDNRLSDETRDRHREFTFVMEAQVSKIEKSLKEAAQSDGKGTPRW 120

Query: 120 IHLDEGEQDELASFLSGMPAAESNDPTWSKSRDGENPQLSDNDLVINCSKNVHISSGLGE 179
           + LDE +++ELA FL+G        P+                                E
Sbjct: 121 VRLDEDDRNELALFLTG--------PS--------------------------------E 140

Query: 180 AKEETPRGHRRAASASADIGFWKISVADDA-QQXXXXXXXXXPMHKVPSLSGFVSAMESK 238
           + +  P GHRR ASA A+   W I+V+DD   +         P  KVPS SGF++ M+  
Sbjct: 141 SAKANPNGHRRTASA-AEFSAWNIAVSDDGLVKKSCDEPVVRPPRKVPSFSGFLNYMDPV 199

Query: 239 MKWPRNGYRKLKVVDHHKETKSTLLPTAETNKGNMACYGRSKSSLKSCDECYDKNLYGWY 298
            K   +  RK K +D   ++ + LLP     +    C  R KS ++  ++CY+K L+GWY
Sbjct: 200 SK---HCNRKWKGLDRQGDSDAALLPIQANQQDMNGCSERGKSCMECEEDCYEKQLHGWY 256

Query: 299 GAIRRQLQRSQYQMQYSQPV 318
           GA++RQLQRSQY+M+YS+ V
Sbjct: 257 GALQRQLQRSQYRMRYSKSV 276


>AT4G30240.1 | Symbols:  | Syntaxin/t-SNARE family protein |
           chr4:14808359-14809745 REVERSE LENGTH=300
          Length = 300

 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 94/137 (68%), Gaps = 1/137 (0%)

Query: 1   MASSFDRWEKDPFFNAAEEVQESADRMDSAYRTWLHATKDTSSMWNSDELRRDLQTTLGT 60
           +A+SFD W+KD FF+AAEEVQESAD M+SAYR W    +D      SDEL ++LQ  L T
Sbjct: 3   VANSFDLWQKDVFFSAAEEVQESADIMESAYRLWFKEKRDGRVSVESDELCKELQAALST 62

Query: 61  AKWQLEEFERAARLNYSRTSGEAR-TRHQDFITAIEDKITKVEHLLHESSTTGSKASMPW 119
           AKWQLEEFERA  L++     +   TRH+ F+TAIE++I +VE  L ES +   K  + W
Sbjct: 63  AKWQLEEFERAVSLSHGNCRDDTTLTRHKQFVTAIENQIYQVESTLLESLSENGKQPLRW 122

Query: 120 IHLDEGEQDELASFLSG 136
           + L++ E+D+LA FLSG
Sbjct: 123 VDLNKEERDDLAMFLSG 139


>AT2G18860.1 | Symbols:  | Syntaxin/t-SNARE family protein |
           chr2:8164358-8165650 FORWARD LENGTH=296
          Length = 296

 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/209 (38%), Positives = 119/209 (56%), Gaps = 14/209 (6%)

Query: 1   MASSFDRWEKDPFFNAAEEVQESADRMDSAYRTWLHATKDTSSMWNSDELRRDLQTTLGT 60
           + +SFD W+KD FF+AAEEVQ+S D M+SAYR W+   K        DE+ ++LQ  LGT
Sbjct: 3   VVNSFDLWQKDVFFSAAEEVQKSTDIMESAYRLWIREKK--------DEICKELQAALGT 54

Query: 61  AKWQLEEFERAARLNYSRT--SGEARTRHQDFITAIEDKITKVEHLLHESSTTGSKASMP 118
           AKWQLEEFE+A RL++ R   +  + TRH+ F+TAIE++I +VE  L E+ +   K  + 
Sbjct: 55  AKWQLEEFEKAVRLSHKRCGDNDSSSTRHKQFVTAIENQIHRVETSLQEAYSENGKKPLR 114

Query: 119 WIHLDEGEQDELASFLSGMPAAESNDPTWS--KSRDGENPQLSDNDLVINCSKNVHISSG 176
           W+ L+E E+D+LA FLSG      +    S  KSR+  N  L +N + ++       +  
Sbjct: 115 WVDLNEEERDDLAMFLSGSSRTSQSFSGESSIKSRESTNSSLVENVMEVSAKVTFKKAKV 174

Query: 177 LGEAKEETPRGHRRAASASAD--IGFWKI 203
            G+  E       R     A+  +G  +I
Sbjct: 175 YGDGSECVIDIEERVTPGQAEKSVGLRRI 203


>AT2G18860.2 | Symbols:  | Syntaxin/t-SNARE family protein |
           chr2:8164395-8165650 FORWARD LENGTH=277
          Length = 277

 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 99/184 (53%), Gaps = 14/184 (7%)

Query: 26  RMDSAYRTWLHATKDTSSMWNSDELRRDLQTTLGTAKWQLEEFERAARLNYSRT--SGEA 83
           RM+SAYR W+   KD        E+ ++LQ  LGTAKWQLEEFE+A RL++ R   +  +
Sbjct: 9   RMESAYRLWIREKKD--------EICKELQAALGTAKWQLEEFEKAVRLSHKRCGDNDSS 60

Query: 84  RTRHQDFITAIEDKITKVEHLLHESSTTGSKASMPWIHLDEGEQDELASFLSGMPAAESN 143
            TRH+ F+TAIE++I +VE  L E+ +   K  + W+ L+E E+D+LA FLSG      +
Sbjct: 61  STRHKQFVTAIENQIHRVETSLQEAYSENGKKPLRWVDLNEEERDDLAMFLSGSSRTSQS 120

Query: 144 DPTWS--KSRDGENPQLSDNDLVINCSKNVHISSGLGEAKEETPRGHRRAASASAD--IG 199
               S  KSR+  N  L +N + ++       +   G+  E       R     A+  +G
Sbjct: 121 FSGESSIKSRESTNSSLVENVMEVSAKVTFKKAKVYGDGSECVIDIEERVTPGQAEKSVG 180

Query: 200 FWKI 203
             +I
Sbjct: 181 LRRI 184