Miyakogusa Predicted Gene

Lj5g3v0308350.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0308350.1 Non Chatacterized Hit- tr|Q9C9P6|Q9C9P6_ARATH
Putative ribosomal protein S9; 44165-44563 OS=Arabidop,51.89,4e-19,no
description,Ribosomal protein S5 domain 2-type fold, subgroup;
seg,NULL; Ribosomal protein S5 dom,CUFF.52794.1
         (120 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74970.1 | Symbols: RPS9, TWN3 | ribosomal protein S9 | chr1:...    94   2e-20

>AT1G74970.1 | Symbols: RPS9, TWN3 | ribosomal protein S9 |
           chr1:28157761-28159202 REVERSE LENGTH=208
          Length = 208

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 62/90 (68%), Gaps = 4/90 (4%)

Query: 25  PQTLTYARTTQPLSL-SRVPKTPSLTVSAAAPVEPETENPM---KYVKSRLPGGVAAQTT 80
           P T+++ R     +L ++  +  SL+++A     PE E  +   KYVKSRLPGG AAQ  
Sbjct: 24  PNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEEIVELKKYVKSRLPGGFAAQKI 83

Query: 81  IGTGRRKSAIARVVLQEGTGKFIINYRDAK 110
           IGTGRRK AIARVVLQEGTGK IINYRDAK
Sbjct: 84  IGTGRRKCAIARVVLQEGTGKVIINYRDAK 113