Miyakogusa Predicted Gene

Lj5g3v0290680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0290680.1 Non Chatacterized Hit- tr|D8S0G6|D8S0G6_SELML
Putative uncharacterized protein OS=Selaginella
moelle,29.32,2e-18,zinc finger,Zinc finger, C2H2-like;
ZINC_FINGER_C2H2_1,Zinc finger, C2H2; ZINC_FINGER_C2H2_2,Zinc
fi,CUFF.52831.1
         (380 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52010.1 | Symbols:  | C2H2-like zinc finger protein | chr5:2...   442   e-124
AT4G12240.1 | Symbols:  | zinc finger (C2H2 type) family protein...   217   1e-56

>AT5G52010.1 | Symbols:  | C2H2-like zinc finger protein |
           chr5:21121626-21122816 REVERSE LENGTH=396
          Length = 396

 Score =  442 bits (1136), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/283 (73%), Positives = 240/283 (84%), Gaps = 6/283 (2%)

Query: 36  FPHRHN-RFRCC----SSIEIDMVRDNKTGSYAAKQNKVVVLWDLDNKPPRGPPYHAAVS 90
           FP RH  R   C    SS EIDMVR NK G +A K+ KVVVLWDLDNKPPRGPPY AA +
Sbjct: 39  FPLRHQWRIESCLKSASSSEIDMVR-NKEGIFAPKEKKVVVLWDLDNKPPRGPPYEAATA 97

Query: 91  LKTLAESFGDVVDISAYANRHAFIHLPQWVLHERRQRKTTDILEKKGIVTPSDPYVCTVC 150
           L+ +AE  G VV+ISAYANRHAFIHLP WV+ ERR+R+  D +E+KG VTP DPY+C VC
Sbjct: 98  LRKVAEKLGRVVEISAYANRHAFIHLPHWVVEERRERRNLDFMERKGEVTPIDPYICGVC 157

Query: 151 GRKCKTNLDLKKHFKQLHQRERQKKLNRMNSLKGKKRQRFKERFIRGNHKYNEAARTLVT 210
           GRKCKTNLDLKKHFKQLH+RERQKK+NRM SLKGKKRQ+FKER++ GN KYNEAAR+L+T
Sbjct: 158 GRKCKTNLDLKKHFKQLHERERQKKVNRMRSLKGKKRQKFKERYVSGNEKYNEAARSLLT 217

Query: 211 PKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLFLVSDDSDFSEML 270
           PKVGYGL +ELRRAGV+VKTVEDKPQAADWA+KRQ+QHSM+RGIDWL LVSDD DFS+ML
Sbjct: 218 PKVGYGLEAELRRAGVYVKTVEDKPQAADWAVKRQIQHSMTRGIDWLVLVSDDKDFSDML 277

Query: 271 KRAREANLGTVVVGDADRALGQHADFWVPWIAVEKGEVSEMDL 313
           ++AREA+LGT+VV D DRALG+HAD WVPW  VEKGE+ E DL
Sbjct: 278 RKAREADLGTLVVSDMDRALGRHADLWVPWSGVEKGEIGEKDL 320


>AT4G12240.1 | Symbols:  | zinc finger (C2H2 type) family protein |
           chr4:7287895-7288989 FORWARD LENGTH=364
          Length = 364

 Score =  217 bits (552), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 120/243 (49%), Positives = 156/243 (64%), Gaps = 3/243 (1%)

Query: 68  KVVVLWDLDNKPPRG-PPYHAAVSLKTLAESFGDVVDISAYANRHAFIHLPQWVLHERRQ 126
           +V V WDLDNKPP   PPY AAV L+T A SFG V  + AYANRHAF ++P  V  +R+ 
Sbjct: 39  RVGVWWDLDNKPPASFPPYDAAVKLRTAASSFGTVKLMMAYANRHAFSYVPLEVREQRKD 98

Query: 127 RKTTDILEKKGIVTPSDPYVCTVCGRKCKTNLDLKKHFKQLHQRERQKKLNRMNSLKGKK 186
           RK  + LE KG+V P +PY C VC R+  TN  L  HFKQ+H+ E QK++ ++ S KG +
Sbjct: 99  RKLLNKLENKGLVKPPEPYFCGVCDRRFYTNEKLINHFKQIHETENQKRMRQIESSKGHR 158

Query: 187 RQRFKERFIRGNHKYNEAARTLVTPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQM 246
           R R   ++     KY  AAR ++TPK GYGLA EL+RAG +VK V DKP AAD ALK  +
Sbjct: 159 RVRLVAKYSMKIEKYKRAARNVLTPKEGYGLADELKRAGFWVKMVSDKPDAADKALKEHL 218

Query: 247 QHSM-SRGIDWLFLVSDDSDFSEMLKRAREANLGTVVVGDADR-ALGQHADFWVPWIAVE 304
              M  R ++ + LVSDDSDF+ +L  A+E  L TVV+GD++  AL + AD    W  V 
Sbjct: 219 VEVMDKREVECVVLVSDDSDFAGILWEAKERCLRTVVIGDSNEGALKRVADVAYSWKEVT 278

Query: 305 KGE 307
            G+
Sbjct: 279 MGK 281