Miyakogusa Predicted Gene

Lj5g3v0290440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0290440.1 Non Chatacterized Hit- tr|K4BUX7|K4BUX7_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,67.14,6e-19,Glycosyl hydrolase domain,NULL; Alpha-amylase
C-terminal beta-sheet dom,Alpha-amylase, C-terminal be,CUFF.52732.1
         (73 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25000.1 | Symbols: ATAMY1, AMY1 | alpha-amylase-like | chr4:...    96   4e-21
AT1G76130.1 | Symbols: ATAMY2, AMY2 | alpha-amylase-like 2 | chr...    51   1e-07
AT1G69830.1 | Symbols: ATAMY3, AMY3 | alpha-amylase-like 3 | chr...    51   2e-07

>AT4G25000.1 | Symbols: ATAMY1, AMY1 | alpha-amylase-like |
           chr4:12852109-12853825 REVERSE LENGTH=423
          Length = 423

 Score = 96.3 bits (238), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/72 (62%), Positives = 55/72 (76%)

Query: 2   EPIKKLTEIRKRNGIKPTSTVNILAAEADLYMAEIDNKIITKIGPKQDLGNLLPPNVQVA 61
           E I KL  IR +NGI  TS+V I AAEADLY+A ID+K+I KIGPKQD+G L+P N  +A
Sbjct: 352 ESISKLVAIRNKNGIGSTSSVTIKAAEADLYLAMIDDKVIMKIGPKQDVGTLVPSNFALA 411

Query: 62  TSGQDYAVWERK 73
            SG D+AVWE+K
Sbjct: 412 YSGLDFAVWEKK 423


>AT1G76130.1 | Symbols: ATAMY2, AMY2 | alpha-amylase-like 2 |
           chr1:28561647-28563914 FORWARD LENGTH=413
          Length = 413

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 2   EPIKKLTEIRKRNGIKPTSTVNILAAEADLYMAEIDNKIITKIGPKQDLGNLLPP--NVQ 59
           + I KL +IR+R  I   STV +L AE++LY A +  KI  K+G     G+  P   +  
Sbjct: 345 DQIVKLIDIRRRQDIHSRSTVRVLKAESNLYAAIVGEKICMKLGD----GSWCPSGRDWT 400

Query: 60  VATSGQDYAVWER 72
           +ATSG  YAVW +
Sbjct: 401 LATSGHRYAVWHK 413


>AT1G69830.1 | Symbols: ATAMY3, AMY3 | alpha-amylase-like 3 |
           chr1:26288518-26293003 REVERSE LENGTH=887
          Length = 887

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 4   IKKLTEIRKRNGIKPTSTVNILAAEADLYMAEIDNKIITKIGPKQDLGNLLPP----NVQ 59
           I  L  +R R  +   S VNI  +E D+Y A ID K+  KIGP    G+  PP    N  
Sbjct: 818 IAALLSLRNRQKLHCRSEVNIDKSERDVYAAIIDEKVAMKIGP----GHYEPPNGSQNWS 873

Query: 60  VATSGQDYAVWE 71
           VA  G+DY VWE
Sbjct: 874 VAVEGRDYKVWE 885