Miyakogusa Predicted Gene

Lj5g3v0276960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0276960.1 Non Chatacterized Hit- tr|I3SNK2|I3SNK2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,Nucleic
acid-binding proteins,Nucleic acid-binding, OB-fold-like; seg,NULL; no
description,Nucleic a,CUFF.52693.1
         (140 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33845.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   179   7e-46
AT4G28440.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   172   9e-44
AT1G23750.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   168   8e-43
AT1G03810.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   162   9e-41
AT1G10590.2 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   161   1e-40
AT1G10590.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   161   1e-40
AT1G10590.3 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   161   1e-40

>AT2G33845.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr2:14317781-14318712 FORWARD LENGTH=182
          Length = 182

 Score =  179 bits (453), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 3/138 (2%)

Query: 3   TQIEKRKPVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLAAKPPRIAECVV 62
           T  EK+KPVFVKVDQLKPGT+GHTLT              + G  S    +P RI+EC+V
Sbjct: 48  TPQEKKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVP---QKPGAASSSHLRPARISECLV 104

Query: 63  GDETGTIVFTARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFEVK 122
           GDET  I+FTARN+QV+LM P +T+ LRNAKIDMFKGSMRLAVD+WGRIE TEPA+  VK
Sbjct: 105 GDETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVK 164

Query: 123 EENNLSLVEYELVNVADE 140
           E+NNLSLVEYELVNV +E
Sbjct: 165 EDNNLSLVEYELVNVVEE 182


>AT4G28440.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr4:14060054-14060970 FORWARD LENGTH=153
          Length = 153

 Score =  172 bits (435), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 102/136 (75%), Gaps = 2/136 (1%)

Query: 7   KRKPVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLA--AKPPRIAECVVGD 64
           KRKPVFVKV+QLKPGT GHTLT              +    S L+  ++P RI EC++GD
Sbjct: 17  KRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD 76

Query: 65  ETGTIVFTARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFEVKEE 124
           ETG I+FTARN+QVDLM P +T+ILRN++IDMFKG+MRL VD+WGRIE T  A+F VKE+
Sbjct: 77  ETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 136

Query: 125 NNLSLVEYELVNVADE 140
           NNLSLVEYEL+NV  +
Sbjct: 137 NNLSLVEYELINVGGD 152


>AT1G23750.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:8400638-8401171 FORWARD LENGTH=137
          Length = 137

 Score =  168 bits (426), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 102/138 (73%), Gaps = 4/138 (2%)

Query: 2   ATQIEKRKPVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLAAKPPRIAECV 61
           +T+   +KP F KVDQL+PGT+GH +             G R   P    A+  RI+EC+
Sbjct: 4   STKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKG-RADGPQ---ARQLRISECI 59

Query: 62  VGDETGTIVFTARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFEV 121
           VGDETG IVFTARN+QVDLM   ST+ LRNAKIDM+KGSMRLAVD+WGR+EVTEPA+F+V
Sbjct: 60  VGDETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKV 119

Query: 122 KEENNLSLVEYELVNVAD 139
           KE+ N+SL+EYELVNV +
Sbjct: 120 KEDTNMSLIEYELVNVVE 137


>AT1G03810.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:958759-959609 FORWARD LENGTH=143
          Length = 143

 Score =  162 bits (409), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 81/132 (61%), Positives = 97/132 (73%), Gaps = 7/132 (5%)

Query: 7   KRKPVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLAAKP---PRIAECVVG 63
           KRKPVFVKVDQLKPGT+GHTL                  R S L  +P   PRIAEC++G
Sbjct: 14  KRKPVFVKVDQLKPGTSGHTLIVKVLESNPVKP----AIRKSSLTQQPISSPRIAECLIG 69

Query: 64  DETGTIVFTARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFEVKE 123
           D+TG I+FTARN+QVDLM   +T+ILRNAKID+FK +MR+AVDRWGRIE+T P +FEV  
Sbjct: 70  DDTGCILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGPVSFEVNR 129

Query: 124 ENNLSLVEYELV 135
            NNLSLVEYE++
Sbjct: 130 ANNLSLVEYEVI 141


>AT1G10590.2 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:3502324-3502991 REVERSE LENGTH=139
          Length = 139

 Score =  161 bits (408), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/131 (60%), Positives = 97/131 (74%), Gaps = 3/131 (2%)

Query: 8   RKPVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLAAKPPRIAECVVGDETG 67
           RKPVF KV++L+PGTNGH+L             G   GRP    ++  RIAEC+VGDETG
Sbjct: 9   RKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGG--GRPMGPQSRQMRIAECLVGDETG 66

Query: 68  TIVFTARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIEVT-EPANFEVKEENN 126
            I+FTARN+QVD+M   S + LRNAKIDM+KGSMRLAVDRWGR+EV  EP +  VK++NN
Sbjct: 67  IIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDNN 126

Query: 127 LSLVEYELVNV 137
           LSL+EYELV+V
Sbjct: 127 LSLIEYELVSV 137


>AT1G10590.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:3502324-3502991 REVERSE LENGTH=139
          Length = 139

 Score =  161 bits (408), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/131 (60%), Positives = 97/131 (74%), Gaps = 3/131 (2%)

Query: 8   RKPVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLAAKPPRIAECVVGDETG 67
           RKPVF KV++L+PGTNGH+L             G   GRP    ++  RIAEC+VGDETG
Sbjct: 9   RKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGG--GRPMGPQSRQMRIAECLVGDETG 66

Query: 68  TIVFTARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIEVT-EPANFEVKEENN 126
            I+FTARN+QVD+M   S + LRNAKIDM+KGSMRLAVDRWGR+EV  EP +  VK++NN
Sbjct: 67  IIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDNN 126

Query: 127 LSLVEYELVNV 137
           LSL+EYELV+V
Sbjct: 127 LSLIEYELVSV 137


>AT1G10590.3 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:3502324-3503033 REVERSE LENGTH=153
          Length = 153

 Score =  161 bits (408), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/131 (60%), Positives = 97/131 (74%), Gaps = 3/131 (2%)

Query: 8   RKPVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLAAKPPRIAECVVGDETG 67
           RKPVF KV++L+PGTNGH+L             G   GRP    ++  RIAEC+VGDETG
Sbjct: 23  RKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGG--GRPMGPQSRQMRIAECLVGDETG 80

Query: 68  TIVFTARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIEVT-EPANFEVKEENN 126
            I+FTARN+QVD+M   S + LRNAKIDM+KGSMRLAVDRWGR+EV  EP +  VK++NN
Sbjct: 81  IIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDNN 140

Query: 127 LSLVEYELVNV 137
           LSL+EYELV+V
Sbjct: 141 LSLIEYELVSV 151