Miyakogusa Predicted Gene

Lj5g3v0254350.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0254350.1 Non Chatacterized Hit- tr|K3Z0S8|K3Z0S8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si020145,62.34,4e-19,Complex1_LYR,Complex 1 LYR protein; FAMILY NOT
NAMED,LYR motif-containing protein 2,CUFF.52670.1
         (77 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76065.1 | Symbols:  | LYR family of Fe/S cluster biogenesis ...   126   3e-30

>AT1G76065.1 | Symbols:  | LYR family of Fe/S cluster biogenesis
          protein | chr1:28544899-28545306 REVERSE LENGTH=80
          Length = 80

 Score =  126 bits (317), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 69/77 (89%)

Query: 1  MDLQDFLIRARVLKLFRQALRIAGRAPSSARAELRQTVRQEMENNRNCNDKQRIRYLISD 60
          +DLQ F++RARVLKL+RQAL+IA RAP   R EL+QTVRQEME NR+CNDKQ+IRYLIS+
Sbjct: 4  LDLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYLISE 63

Query: 61 GLERLKRLDEMLDMQGH 77
          GLER+K LDEMLDMQGH
Sbjct: 64 GLERIKGLDEMLDMQGH 80